View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2294_low_7 (Length: 273)
Name: NF2294_low_7
Description: NF2294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2294_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 33095324 - 33095122
Alignment:
| Q |
12 |
atgaaccaataaaataacacttcatttgcatttatatattctttctttaatgtctctgacatgattacaacacataaacacttgaattgcagttatatat |
111 |
Q |
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| T |
33095324 |
atgagccaataaaataacccttcatttgcatttatatattctttctttaatgtctctgacatgattacaacacataaacacttcaattgcagttatatat |
33095225 |
T |
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| Q |
112 |
tctttcaattgcagctatattactactcaattcctgatcataagcaaatttatcaaatttagcaaatctatttctttaatgtctcctatagagaacggtc |
211 |
Q |
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| T |
33095224 |
tctttcaattgcagctatattactactcaattcctgatcataagcaaa---------tttagcaaatctatttctttaatgtctcctatagagaacggtc |
33095134 |
T |
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| Q |
212 |
cctaaacgagta |
223 |
Q |
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|||||||||||| |
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| T |
33095133 |
cctaaacgagta |
33095122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 33080758 - 33080665
Alignment:
| Q |
12 |
atgaaccaataaaataacacttcatttgcatttatatattctttctttaatgtctctgacatgattacaacacataaacacttgaattgcagtt |
105 |
Q |
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|||| |||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||| |||||||||| |
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| T |
33080758 |
atgagccaataaattaacacctcatttgcatttatatattctttctttaatgtctccaacatgattacaacaaattaacacttcaattgcagtt |
33080665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 33080530 - 33080485
Alignment:
| Q |
90 |
cacttgaattgcagttatatattctttcaattgcagctatattact |
135 |
Q |
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| T |
33080530 |
cacttcaattgcagttatatattctttcaattgcagctatgttact |
33080485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 258
Target Start/End: Complemental strand, 29680435 - 29680400
Alignment:
| Q |
223 |
acggtccctaaacgagtaattcaagagggattctag |
258 |
Q |
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| T |
29680435 |
acggtccctaaacgagtacttcaagagggattctag |
29680400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 22764727 - 22764648
Alignment:
| Q |
53 |
tttctttaatgtctctgacatgattacaacacataaacacttgaattgcagttatatattctttcaattgcagctatatt |
132 |
Q |
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||||||||||||||| | ||||||| | ||| || ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
22764727 |
tttctttaatgtctcaggcatgatttccacaaattaacacttcaattgcagttatatattctttcaattgcagctatatt |
22764648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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