View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2295_high_3 (Length: 350)
Name: NF2295_high_3
Description: NF2295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2295_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 187 - 333
Target Start/End: Complemental strand, 14173935 - 14173786
Alignment:
| Q |
187 |
tggaaacgattaatatgacagaaacatacatgcctattcaaattat---agtctttttactttgcaattgatgctccttgaagataaattttagttgttt |
283 |
Q |
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| T |
14173935 |
tggaaacgattaatatgacagaaacatacatgtctattcaaattattttagtctttttactttgcaattgatgctccttgaagataaattttagttgttt |
14173836 |
T |
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| Q |
284 |
tggcttattgctttcatgttgatgggagtttacattttagctatggaatg |
333 |
Q |
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| T |
14173835 |
tggcttattgctttcatgttgatgggagtttacattttagctatggaatg |
14173786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 30 - 137
Target Start/End: Complemental strand, 14174206 - 14174099
Alignment:
| Q |
30 |
taagtttcttgaagaagtcttcaaccataaaggaacaaggaggatcgtgaaagaaacctttgagttgccacgttagaaaataaataaatagggcaaacaa |
129 |
Q |
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| T |
14174206 |
taagtttcttgaagaagtcttcaaccataaaggaacaaggaggatcgtgaaagaaacctttgagttgccacgttagaaaataaataaatagggcagacga |
14174107 |
T |
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| Q |
130 |
ctctttgg |
137 |
Q |
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| T |
14174106 |
ctctttgg |
14174099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 14170469 - 14170383
Alignment:
| Q |
30 |
taagtttcttgaagaagtcttcaaccataaaggaacaaggaggatcgtgaaagaaacctttgagttgccacgttagaaaataaataa |
116 |
Q |
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| T |
14170469 |
taagtttcttgaagaattcttcaaccaagaaggaacaaggaggattgtgaaagaagtctttgagttgccatgttagaaaataaataa |
14170383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 14174038 - 14173993
Alignment:
| Q |
144 |
aaactttattttgtctattcaaacacaaatctgatagtcattgtgg |
189 |
Q |
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| T |
14174038 |
aaactttattttgtctattcaaacataaatctgatagtcattgtgg |
14173993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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