View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2295_high_5 (Length: 348)
Name: NF2295_high_5
Description: NF2295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2295_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 22 - 319
Target Start/End: Original strand, 37840682 - 37840979
Alignment:
| Q |
22 |
tcattcatacaccctataactttgtggtctctttccttgtaatttcctttatcagaagtttcacagaaattctaagagtttaccatccaatttccttgtc |
121 |
Q |
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| T |
37840682 |
tcattcataaaccctataactttgtggtctctttccttgtaatttcctttatcagaagtttcacagaaattctaagagtttaccatccaatttccttgtc |
37840781 |
T |
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| Q |
122 |
attccttcaagatagcttagtttcaaagtaagcacctcaaagaacaaaacaatctcaatcatcagctctaaaatatttgtgacctgacaaggtaagttct |
221 |
Q |
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| T |
37840782 |
attccttcaagatagcttagtttcaaagtaagcacctcaaagaacaaaacaatctcaatcatcagctctaaaatatttgtgacctgacaaggtaagttct |
37840881 |
T |
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| Q |
222 |
tcttattatgctgcaaccttgtctaaatgactagaatttgttgtagtagtagaattatcaaactcttgttgattgtttccttcttgcatggtggtttt |
319 |
Q |
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| T |
37840882 |
tcttattatgctgcaaccttgtctaaatgactagaatttgttgtagtagtagaattatcaaactcttgttgattgtttccttcttgcatggtggtttt |
37840979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 140 - 292
Target Start/End: Original strand, 37821225 - 37821384
Alignment:
| Q |
140 |
agtttcaaagtaagcacctcaaagaacaaaacaatctca---atcatcagctctaaaatatttgtg----acctgacaaggtaagttcttcttattatgc |
232 |
Q |
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| T |
37821225 |
agtttcaaagaagacacctcaaagaacaaaaaaatctcattcatcatcagctccaaaatctttccctcaaacttgacaaggtaagtgcttcttattctgt |
37821324 |
T |
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| Q |
233 |
tgcaaccttgtctaaatgactagaatttgttgtagtagtagaattatcaaactcttgttg |
292 |
Q |
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| T |
37821325 |
tgcaaccttgtctaaatgactagaattagttgtagcagtaaaattatcacaatcttgttg |
37821384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 206 - 292
Target Start/End: Original strand, 37829540 - 37829626
Alignment:
| Q |
206 |
tgacaaggtaagttcttcttattatgctgcaaccttgtctaaatgactagaatttgttgtagtagtagaattatcaaactcttgttg |
292 |
Q |
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| T |
37829540 |
tgacaaggtaagtgcttcttattctgttgcaaccttgtctaaatgactagaattagttgtagcagtaaaattatcacaatcttgttg |
37829626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 37835274 - 37835356
Alignment:
| Q |
236 |
aaccttgtctaaatgactagaatttgttgtagtagtagaattatcaaactcttgttgattgtttccttcttgcatggtggttt |
318 |
Q |
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| T |
37835274 |
aaccttgtccaaatgactagaactagttgtagcagtaaattcattacactcttgttgattatttccttcttgcatagtggttt |
37835356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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