View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2295_high_9 (Length: 308)
Name: NF2295_high_9
Description: NF2295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2295_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 1806702 - 1806795
Alignment:
| Q |
10 |
aaaagaatgactccacacggtcaaagactatacccatccaaaaatgtattatatgtaaaatgtaaaattgatcattctaagctaatttatttat |
103 |
Q |
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| T |
1806702 |
aaaagaatgactccacacggtcaaagactatacccatccaaaaatgtattatatgtaaaatgtaaaattgatcattctaagctaatttatttat |
1806795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 167 - 279
Target Start/End: Original strand, 1806804 - 1806914
Alignment:
| Q |
167 |
aataaaaaattaaatatattatctaaattactctataattgtattcatcattccaaagaatatgagttacttttgttcatacttcattacgtaacggcgc |
266 |
Q |
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| T |
1806804 |
aataaaaaataaagtatattatctaaattactctataattctattcatcattccaaata--atgagttacttttgttcatagttcattaccttacggcgc |
1806901 |
T |
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| Q |
267 |
aataactaatagt |
279 |
Q |
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| T |
1806902 |
aataactaatagt |
1806914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 6569941 - 6569904
Alignment:
| Q |
214 |
tcattccaaagaatatgagttacttttgttcatacttc |
251 |
Q |
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| T |
6569941 |
tcattccaaagaatatgagttacttttgttaatacttc |
6569904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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