View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2295_low_1 (Length: 712)
Name: NF2295_low_1
Description: NF2295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2295_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 11 - 683
Target Start/End: Original strand, 3916161 - 3916816
Alignment:
| Q |
11 |
caaaggccaaaacaaacaaagtttataccaaaacaagcaagttataaacgtcggcggcggtggtaacggaaaacctccatacccttcgggttcgtaaaca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3916161 |
caaaggccaaaacaaacaaagtttataccaaaacaagcaagttataaacgtcggcggcggtggtaacggaaaacctccatacccttcgggttcgtaaaca |
3916260 |
T |
|
| Q |
111 |
cttccatcctttggtggttcagctcctctaccggcagcttcggtgtgtccgttcagaatcgccgtaacaaggagaactaaaacaagtgaaccagtgatgg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3916261 |
cttccatcctttggtggttcagctcctctaccggcagcttcgatgtggccgttcagaatcgccgtaacaaggagaactaaaacaagtgaaccagtgatgg |
3916360 |
T |
|
| Q |
211 |
gttttgccatagtgtatataagttactcttgaagnnnnnnnnnnnnnnnnnctcttgtgtttgtatgaataaactgtctccaaaatcactccaatttata |
310 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
3916361 |
tttttgccatagtgtatataagttactcttgaagttttttt-----------tctcgtgtttgtatgaataaattttctccaaaatcactccaatttata |
3916449 |
T |
|
| Q |
311 |
gaacttaaggctagagtgatgagaactattgatttcttacaatggaagtgaattaaatttaccttatcttgaggaaattgatattagcaaaagttaatt- |
409 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| |||| ||||| | ||||||||||| ||| |||| |||||| |
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| T |
3916450 |
gaacttaaggctagagtgatgagaactattgatttcctaaaatagaagtgaattaaaattacattatcgtaaggaaattgattttaacaaagcttaattg |
3916549 |
T |
|
| Q |
410 |
aaggtagctgaaaaacgtgttgcaagttgcaaccatggttttaaag-attaaggatcatagtttccttttacttatgttgtttaaggttgagcagttttt |
508 |
Q |
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|| ||||||||||||||||||||||| || |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| | |||| |
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| T |
3916550 |
aaagtagctgaaaaacgtgttgcaagatgaaaccatggttttaaagtattaaggattttagtttccttttacttatgttgtttaaggttgacatgctttt |
3916649 |
T |
|
| Q |
509 |
agttacataaggaataaatagaaagtaattaagttaaaggatagaataactaatgaatgaatagaaatatggtgtgatccaattgggccattgattatgc |
608 |
Q |
| |
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||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
3916650 |
tgttacatgaggaataaatagaaagtaattatgttaaaggatagaataactaatgaatgaatagaaatacagtgtgatccaattgggtcatt-------- |
3916741 |
T |
|
| Q |
609 |
ggtttgtcttcacttgtcaaatggaaaagttcattacatgttgatatattttcaatagtgtaacattcttaattt |
683 |
Q |
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||||||||||||||||| ||||||| ||||||||| ||||||||||| ||||||||||| ||||||| ||||||| |
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| T |
3916742 |
ggtttgtcttcacttgtaaaatggacaagttcattccatgttgatatcttttcaatagtttaacatttttaattt |
3916816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 5398604 - 5398543
Alignment:
| Q |
162 |
ttcagaatcgccgtaacaaggagaactaaaacaagtgaaccagtgatgggttttgccatagtgta |
226 |
Q |
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|||| |||||||| |||||||||||| |||||||||||| ||| ||| ||||||||||||||| |
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| T |
5398604 |
ttcaaaatcgccgcaacaaggagaaccaaaacaagtgaagcag---tggattttgccatagtgta |
5398543 |
T |
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