View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2295_low_12 (Length: 383)
Name: NF2295_low_12
Description: NF2295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2295_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 78 - 354
Target Start/End: Original strand, 47285327 - 47285603
Alignment:
| Q |
78 |
gggaagcaacatgaagctaagttctcaaataaacattacaaattgagcatgcataatatatattaattatcagtaaactcatgtttaacttttaccccac |
177 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
47285327 |
gggaagcaacatgaagctaagctctcaaataaacattacaaattgagcatgcataatatatattaattatcaacaaactcatgtttaacttttaccccac |
47285426 |
T |
|
| Q |
178 |
ttagaggaggagcagaggcgctcatattttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgt |
277 |
Q |
| |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||| |
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| T |
47285427 |
ttagaggaggagcacaggcgcttatattttgagtatcataactgaaagaaggagcatgcgactgatcaataaaagcaatgacagaaacaagagtagttgt |
47285526 |
T |
|
| Q |
278 |
tccatcatcgagcttttgaatctggagatctggtctctttcggatcctagacatgtatctcttttttctctcttctt |
354 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47285527 |
tccatcatcgagcttttgaatctggagatatggtctctttcggatcctagacatgtatctcttttttctctcttctt |
47285603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 92 - 354
Target Start/End: Original strand, 47306901 - 47307160
Alignment:
| Q |
92 |
agctaagttctcaaataaacattacaaattgagcatgcataatatatattaattatcagtaaactcatgtttaacttttaccccacttagaggaggagca |
191 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||| |||||||||| |||| ||||||| | ||| ||||||||| ||||||||||||||||||||| |
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| T |
47306901 |
agctaagctctcaaataaacattataaattgagcaagcataatataaattagttatcagcaggctccaatttaactttgaccccacttagaggaggagca |
47307000 |
T |
|
| Q |
192 |
gaggcgctcatattttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagct |
291 |
Q |
| |
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| || |||||||| ||| ||| |||||| | |||| |||||||||||| |||| |||||||||| ||||||| ||||||||||||||||| ||||| |
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| T |
47307001 |
ggcgcactcatattatgattattataacttacagaaacagcatgtgactggtcaacagaagcaatg---ggaacaaaagtagttgttccatcattgagct |
47307097 |
T |
|
| Q |
292 |
ttt-gaatctggagatctggtctctttcggatcctagacatgtatctcttttttctctcttctt |
354 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
47307098 |
tttggaatc-ggagatctggtctctttcggatcctagacatgtatctcttttttttctcttctt |
47307160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 104 - 353
Target Start/End: Original strand, 2589401 - 2589649
Alignment:
| Q |
104 |
aaataaacattacaaattgagcatgcataatatatattaattatcagtaaactcatgtttaacttttaccccacttagaggaggagcagaggcgctcata |
203 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||| || ||| ||||| |||||| || || | ||||||| || |||||| |
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| T |
2589401 |
aaataaatattacaaattgagcatgcataatatattttaattatttgtgg-ctccaatttaatttttactccgtataccgaaggagcaagggaactcata |
2589499 |
T |
|
| Q |
204 |
ttttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatctgga |
303 |
Q |
| |
|
|||||| |||||||| ||| ||| |||||| || ||||||| |||||||| || ||||||| ||||||||||||||||| ||||||||||||| ||| |
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|
| T |
2589500 |
ttttgattatcataattgaccaaagtagcatgagattgatcaacagaagcaacaactggaacaaaagtagttgttccatcattgagcttttgaatccgga |
2589599 |
T |
|
| Q |
304 |
gatctggtctctttcggatcctagacatgtatctcttttttctctcttct |
353 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
2589600 |
gatttggtctctttcggatcttagacatgtatctcttttttctctcttct |
2589649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 104 - 353
Target Start/End: Original strand, 10299462 - 10299710
Alignment:
| Q |
104 |
aaataaacattacaaattgagcatgcataatatatattaattatcagtaaactcatgtttaacttttaccccacttagaggaggagcagaggcgctcata |
203 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||| ||| ||||| |||||| || |||| | |||||||| || |||||| |
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|
| T |
10299462 |
aaataaatattacaaattgagcatgcataatatattttaattatcagtgg-ctctaatttaatttttactccgcttaccgaaggagcaggggaactcata |
10299560 |
T |
|
| Q |
204 |
ttttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatctgga |
303 |
Q |
| |
|
|||||| |||||||| ||| ||| |||||| || ||||||| ||||| || || ||||||| ||||||||||| ||||| ||||||||||||||||| |
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|
| T |
10299561 |
ttttgattatcataattgatcaaagtagcatgagaatgatcaacagaag-aacaaccggaacaaaagtagttgttctatcattgagcttttgaatctgga |
10299659 |
T |
|
| Q |
304 |
gatctggtctctttcggatcctagacatgtatctc-ttttttctctcttct |
353 |
Q |
| |
|
||| |||||||||| |||| |||||||||||||| ||||||||||||||| |
|
|
| T |
10299660 |
gatttggtctcttttagatcatagacatgtatctctttttttctctcttct |
10299710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 104 - 346
Target Start/End: Complemental strand, 10300133 - 10299891
Alignment:
| Q |
104 |
aaataaacattacaaattgagcatgcataatatatattaattatcagtaaactcatgtttaacttttaccccacttagaggaggagcagaggcgctcata |
203 |
Q |
| |
|
||||||| |||| ||||||| | |||||||||||| ||||||||||| || || |||||||||||| | |||| | ||| || || ||| |||||| |
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|
| T |
10300133 |
aaataaatattataaattgaacttgcataatatattttaattatcagcaagctttaatttaacttttacttcgcttacaagagaagtaggggcactcata |
10300034 |
T |
|
| Q |
204 |
ttttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatctgga |
303 |
Q |
| |
|
|||||| |||||||| ||| ||||| |||||| ||||||||||||||| ||| || |||||| ||| ||||||||| ||| ||| ||| ||||||| | |
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|
| T |
10300033 |
ttttgattatcataattgacagaagcagcatgcgactgatcaatagaaacaacaacttgaacaaaagttgttgttccaacattgagttttggaatctgaa |
10299934 |
T |
|
| Q |
304 |
gatctggtctctttcggatcctagacatgtatctcttttttct |
346 |
Q |
| |
|
||| | ||||||| |||||||||||||||||||||||||||| |
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|
| T |
10299933 |
gattttatctctttgggatcctagacatgtatctcttttttct |
10299891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 104 - 343
Target Start/End: Complemental strand, 2590072 - 2589833
Alignment:
| Q |
104 |
aaataaacattacaaattgagcatgcataatatatattaattatcagtaaactcatgtttaacttttaccccacttagaggaggagcagaggcgctcata |
203 |
Q |
| |
|
||||||| |||||||||||| | |||||||||||| || |||||||| || || |||||||||||| | |||| | ||| || || || |||||| |
|
|
| T |
2590072 |
aaataaatattacaaattgaacttgcataatatattttcattatcagcaagcttcaatttaacttttacttcgcttacaagagaagtaggggtactcata |
2589973 |
T |
|
| Q |
204 |
ttttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatctgga |
303 |
Q |
| |
|
|||||| |||||||| ||| ||||| |||||| |||||||||| |||| ||| || |||||| ||| ||||||||| ||| ||| |||||||| || | |
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|
| T |
2589972 |
ttttgattatcataattgacagaagcagcatgcgactgatcaacagaaacaacaactcgaacaaaagttgttgttccaacattgagtttttgaatatgaa |
2589873 |
T |
|
| Q |
304 |
gatctggtctctttcggatcctagacatgtatctcttttt |
343 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2589872 |
gatttggtctctttgggatcctagacatgtatctcttttt |
2589833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 104 - 353
Target Start/End: Original strand, 22222132 - 22222382
Alignment:
| Q |
104 |
aaataaacattacaaattgagcatgcataatatatattaattatcagtaaactcatgtttaacttttaccccacttagaggaggagcagaggcgctcata |
203 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||| ||| ||| ||||| |||||| || |||| |||||||||| || ||||| |
|
|
| T |
22222132 |
aaataaatattacaaattgagcatgcataatatattttaattattagtgt-ctccaatttaatttttactccgcttaccggaggagcaggggaagtcata |
22222230 |
T |
|
| Q |
204 |
ttttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatctgga |
303 |
Q |
| |
|
|||||| |||||||| ||| | ||| |||||| || || ||||||||||||| || |||||| ||||||||||||||||| || ||| |||||| ||| |
|
|
| T |
22222231 |
ttttgattatcataattgacaaaagcagcatgagattggtcaatagaagcaacaactcgaacaaaagtagttgttccatcattgatcttatgaatccgga |
22222330 |
T |
|
| Q |
304 |
gatctggt--ctctttcggatcctagacatgtatctcttttttctctcttct |
353 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22222331 |
gatttggtcactctttcggatcctagacatgtatctcttttttttctcttct |
22222382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 104 - 354
Target Start/End: Complemental strand, 22222806 - 22222556
Alignment:
| Q |
104 |
aaataaacattacaaattgagcatgcataatatatattaattatcagtaaactcatgtttaacttttaccccacttagaggaggagcagaggcgctcata |
203 |
Q |
| |
|
||||||| |||||||||||| | |||||||||||| ||||||||||| || ||| ||| |||||||| | |||| | |||||||||||| |||||| |
|
|
| T |
22222806 |
aaataaatattacaaattgaacttgcataatatattttaattatcagcaagctccaatttgacttttacttcgcttacaagaggagcagaggaactcata |
22222707 |
T |
|
| Q |
204 |
ttttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatctgga |
303 |
Q |
| |
|
|||||| |||||||| ||| ||||| |||||| ||||||||| ||| ||| || | ||||| || ||||||||| ||| ||| ||||||||||| | |
|
|
| T |
22222706 |
ttttgattatcataattgatagaagcagcatgcaactgatcaacggaaacaacaactgaaacaaatgttgttgttccaacattgagtttttgaatctgca |
22222607 |
T |
|
| Q |
304 |
gatctggtctctttcggatcctagacatgtatctcttttttctctcttctt |
354 |
Q |
| |
|
||| || ||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22222606 |
gatttgttctctttgggatcctagacatgtatctcttttttctttcttctt |
22222556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 230 - 354
Target Start/End: Complemental strand, 38261211 - 38261087
Alignment:
| Q |
230 |
agcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatctggagatctggtctctttcggatcctagac |
329 |
Q |
| |
|
||||||||||| |||| | ||||||| |||||||||| ||||||||||||||||| ||||||||||||||| ||| || |||||||| |||||||| |
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|
| T |
38261211 |
agcatgtgacttatcaccacaagcaataacaggaacaaaagtagttgttccatcattgagcttttgaatctgaagacgcggcctctttcgaatcctagaa |
38261112 |
T |
|
| Q |
330 |
atgtatctcttttttctctcttctt |
354 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
38261111 |
atgtatctcttttttctgtcttctt |
38261087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 230 - 354
Target Start/End: Complemental strand, 38244911 - 38244787
Alignment:
| Q |
230 |
agcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatctggagatctggtctctttcggatcctagac |
329 |
Q |
| |
|
||||||||||| |||| | |||||| |||||||||| ||||||| ||||||||| ||||||||||||||| ||| ||||||||||| |||||||| |
|
|
| T |
38244911 |
agcatgtgacttatcagcacaagcaacaacaggaacaaaagtagttcttccatcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaa |
38244812 |
T |
|
| Q |
330 |
atgtatctcttttttctctcttctt |
354 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
38244811 |
ttgtatctcttttttctgtcttctt |
38244787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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