View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2295_low_13 (Length: 370)

Name: NF2295_low_13
Description: NF2295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2295_low_13
NF2295_low_13
[»] chr5 (6 HSPs)
chr5 (75-232)||(19858792-19858950)
chr5 (226-316)||(19859067-19859153)
chr5 (293-358)||(24194609-24194674)
chr5 (82-189)||(26728395-26728503)
chr5 (86-160)||(20728425-20728500)
chr5 (82-189)||(17170250-17170358)
[»] chr7 (7 HSPs)
chr7 (234-338)||(13146296-13146396)
chr7 (75-188)||(13761067-13761180)
chr7 (75-189)||(11773332-11773447)
chr7 (90-160)||(13451897-13451965)
chr7 (83-160)||(8323317-8323395)
chr7 (146-228)||(13146523-13146607)
chr7 (297-353)||(8323665-8323721)
[»] chr6 (8 HSPs)
chr6 (75-228)||(14355665-14355820)
chr6 (75-228)||(14565933-14566087)
chr6 (75-135)||(18027872-18027932)
chr6 (75-226)||(16896682-16896834)
chr6 (249-294)||(23300001-23300046)
chr6 (105-193)||(23300226-23300315)
chr6 (75-189)||(14894471-14894581)
chr6 (313-358)||(23224413-23224454)
[»] chr8 (4 HSPs)
chr8 (226-294)||(16228609-16228677)
chr8 (320-358)||(12518812-12518849)
chr8 (75-160)||(18830025-18830111)
chr8 (82-135)||(23539709-23539762)
[»] chr4 (3 HSPs)
chr4 (82-162)||(15712123-15712204)
chr4 (105-228)||(6188981-6189105)
chr4 (293-353)||(16571582-16571642)
[»] chr3 (7 HSPs)
chr3 (234-340)||(15044827-15044929)
chr3 (86-160)||(11677177-11677252)
chr3 (75-160)||(19631335-19631421)
chr3 (75-189)||(11832317-11832431)
chr3 (234-318)||(15540418-15540498)
chr3 (86-228)||(18747262-18747405)
chr3 (75-136)||(11829190-11829251)
[»] scaffold0007 (1 HSPs)
scaffold0007 (83-189)||(204147-204254)
[»] scaffold0004 (1 HSPs)
scaffold0004 (86-160)||(370745-370819)
[»] chr2 (6 HSPs)
chr2 (83-160)||(19285282-19285360)
chr2 (75-158)||(19901711-19901795)
chr2 (90-189)||(28774914-28775013)
chr2 (226-298)||(19285016-19285088)
chr2 (82-189)||(21654885-21654993)
chr2 (315-358)||(34133951-34133992)
[»] scaffold0014 (1 HSPs)
scaffold0014 (75-190)||(202247-202361)
[»] scaffold0186 (1 HSPs)
scaffold0186 (173-228)||(19703-19758)
[»] chr1 (3 HSPs)
chr1 (75-189)||(20408667-20408782)
chr1 (293-359)||(21720634-21720700)
chr1 (75-160)||(21981513-21981599)
[»] scaffold0672 (1 HSPs)
scaffold0672 (132-228)||(4967-5064)
[»] scaffold0417 (1 HSPs)
scaffold0417 (233-266)||(4098-4131)


Alignment Details
Target: chr5 (Bit Score: 103; Significance: 4e-51; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 75 - 232
Target Start/End: Original strand, 19858792 - 19858950
Alignment:
Q  75 atatgttcttgtgtgtgattatttatctccgtgtgtatttaatttgggactagtgaatttt-ggcatataatggtattttagtcattctcaggctcatcg 173  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||| ||||| | |||||||||||||||||| |||||      
T  19858792 atatgctcttgtgtgtgattatttgtctctgtgtgtatttaatttgggactagtgaatttttggcctataaggatattttagtcattctcagactcatgc 19858891  T
Q  174 gtattttggtcatttgacgaatgaaggtgaactagtcattttattaagaaggttagttt 232  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  19858892 gtattttgatcatttgacgaatgatggtgaactagtcattttattaagaaggtcagttt 19858950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 226 - 316
Target Start/End: Original strand, 19859067 - 19859153
Alignment:
Q  226 ttagtttataagaatgttaaactcattatgacaattagaaatcaaactcaattaagatgtgactatatatataaacataattcttgtgaga 316  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    ||||||||||||||||||||||||    
T  19859067 ttagtttgtaagaatgttaaactcattatgacaattagaaaccaaactcaattaagaggtgac----tatataaacataattcttgtgaga 19859153  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 358
Target Start/End: Complemental strand, 24194674 - 24194609
Alignment:
Q  293 tatataaacataattcttgtgagaaaattaggttttcccattcattcattcacttcacaaaatatt 358  Q
    |||||||||| ||  |||||||||||||||||| ||  |||||||||| |||||||||||||||||    
T  24194674 tatataaacacaacacttgtgagaaaattaggtctttacattcattcactcacttcacaaaatatt 24194609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 189
Target Start/End: Complemental strand, 26728503 - 26728395
Alignment:
Q  82 cttgtgtgtgattatttatctccgtgtgtatttaatttgggactagtgaa-ttttggcatataatggtattttagtcattctcaggctcatcggtatttt 180  Q
    ||||||||||||||||| |||| |||| ||||| |||||||| |  |||| ||||| |||| || ||||||||||||||| | || || |  ||||||||    
T  26728503 cttgtgtgtgattatttgtctctgtgtctattttatttgggattgatgaatttttgacatagaagggtattttagtcatttttagactaaggggtatttt 26728404  T
Q  181 ggtcatttg 189  Q
     ||||||||    
T  26728403 cgtcatttg 26728395  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 20728500 - 20728425
Alignment:
Q  86 tgtgtgattatttatctccgtgtgtatttaatttgggactagtgaa-ttttggcatataatggtattttagtcatt 160  Q
    ||||||||||||| |||  |||||||||| |||||||| ||||||| ||||||  || || |||||||||||||||    
T  20728500 tgtgtgattatttgtctttgtgtgtattttatttgggattagtgaatttttggtctagaaaggtattttagtcatt 20728425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 189
Target Start/End: Complemental strand, 17170358 - 17170250
Alignment:
Q  82 cttgtgtgtgattatttatctccgtgtgtatttaatttgggactagtgaattttggcatataatgg-tattttagtcattctcaggctcatcggtatttt 180  Q
    ||||| |||||||| || |||| |||||||||| |||  ||| ||||| ||||| ||  || |||| ||||||||||||| | || ||||  ||||||||    
T  17170358 cttgtatgtgattaattgtctctgtgtgtattttattcaggattagtggatttttgctcattatgggtattttagtcatttttagactcaagggtatttt 17170259  T
Q  181 ggtcatttg 189  Q
    |||||||||    
T  17170258 ggtcatttg 17170250  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 234 - 338
Target Start/End: Complemental strand, 13146396 - 13146296
Alignment:
Q  234 taagaatgttaaactcattatgacaattagaaatcaaactcaattaagatgtgactatatatataaacataattcttgtgagaaaattaggttttcccat 333  Q
    |||||||||||| ||| |||||| ||||||||||||||| ||||||||| |||||||||||    | ||||| | ||  ||||||||||| |||||||||    
T  13146396 taagaatgttaagctcgttatgataattagaaatcaaacccaattaagaggtgactatata----agcataagttttaagagaaaattagattttcccat 13146301  T
Q  334 tcatt 338  Q
    |||||    
T  13146300 tcatt 13146296  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 188
Target Start/End: Original strand, 13761067 - 13761180
Alignment:
Q  75 atatgttcttgtgtgtgattatttatctccgtgtgtatttaatttgggactagtgaattttggcat-ataatggtattttagtcattctcaggctcatcg 173  Q
    |||||| ||||| ||||||||||| |||  |||||||||| ||| |||| |||| ||||||||| | | ||||| |||||||||||| | || ||||| |    
T  13761067 atatgtacttgtatgtgattatttgtctatgtgtgtattttattcgggattagttaattttggcttaagaatggcattttagtcatt-ttagactcatgg 13761165  T
Q  174 gtattttggtcattt 188  Q
    |||| ||||||||||    
T  13761166 gtatcttggtcattt 13761180  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 11773332 - 11773447
Alignment:
Q  75 atatgttcttgtgtgtgattatttatctccgtgtgtatttaatttgggactagtgaattttggcat-ataatggtattttagtcattctcaggctcatcg 173  Q
    |||||| ||||||||||| ||||| |||| |||||||||| ||| |||| ||||| |||||||  | | || ||||||||||||||| | || ||||  |    
T  11773332 atatgtgcttgtgtgtgactatttgtctctgtgtgtattttattcgggattagtggattttggtttaagaagggtattttagtcatttttagactcaggg 11773431  T
Q  174 gtattttggtcatttg 189  Q
     ||||||| |||||||    
T  11773432 atattttgatcatttg 11773447  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 13451897 - 13451965
Alignment:
Q  90 tgattatttatctccgtgtgtatttaatttgggactagtgaattttggcatataatggtattttagtcatt 160  Q
    ||||||||| ||||  ||||||||| ||| |||| ||||| |||||||| ||||| |||||||||||||||    
T  13451897 tgattatttctctc--tgtgtattttattagggattagtggattttggcctataagggtattttagtcatt 13451965  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 8323317 - 8323395
Alignment:
Q  83 ttgtgtgtgattatttatctccgtgtgtatttaatttgggactagtgaa-ttttggcatataatggtattttagtcatt 160  Q
    |||| |||||||| || |||| |||||||||| ||||| || ||||||| ||||||| || || |||||||||||||||    
T  8323317 ttgtatgtgattaattgtctctgtgtgtattttatttgagattagtgaatttttggcttagaagggtattttagtcatt 8323395  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 228
Target Start/End: Complemental strand, 13146607 - 13146523
Alignment:
Q  146 ggtattttagtcattctcaggctcatcggtattttggtcatttgacgaatgaaggtgaactagtca--ttttattaagaaggtta 228  Q
    ||||||||||||||| | || || |  ||||||||||||||||||||| | | ||| || ||||||  |||||||||||||||||    
T  13146607 ggtattttagtcatttttagactaagaggtattttggtcatttgacgagtaagggtaaattagtcattttttattaagaaggtta 13146523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 8323665 - 8323721
Alignment:
Q  297 taaacataattcttgtgagaaaattaggttttcccattcattcattcacttcacaaa 353  Q
    |||||||||  |||||||||||||||||| ||  |||||||||| ||| ||||||||    
T  8323665 taaacataacacttgtgagaaaattaggtctttacattcattcactcatttcacaaa 8323721  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 14355820 - 14355665
Alignment:
Q  75 atatgttcttgtgtgtgattatttatctccgtgtgtatttaatttgggactagtgaatttt-ggcatataatggtattttagtcattctcaggctcatcg 173  Q
    |||||| |||||||||||||  ||  ||| |||||||||| ||| |||| ||||| ||||| ||| || || ||||||||||||||| | ||   ||| |    
T  14355820 atatgtgcttgtgtgtgattgattgcctctgtgtgtattttattcgggattagtggatttttggcctagaagggtattttagtcattattagagccatgg 14355721  T
Q  174 gtattttggtcatttgacgaatgaaggtgaactagtca-ttttattaagaaggtta 228  Q
    ||||||||||||||||  || ||||||| || |||||| |||||||||||||||||    
T  14355720 gtattttggtcatttggtgagtgaaggtaaattagtcatttttattaagaaggtta 14355665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 228
Target Start/End: Original strand, 14565933 - 14566087
Alignment:
Q  75 atatgttcttgtgtgtgattatttatctccgtgtgtatttaatttgggactagtgaattttggcatat-aatggtattttagtcattctcaggctcatcg 173  Q
    ||||||| || |||||||||| || |||  |||||||||| |||||||| || ||||||| ||| ||  |||||||||||||||||| | || ||||  |    
T  14565933 atatgtttttatgtgtgattaattgtctttgtgtgtattttatttgggattactgaatttcggcttaagaatggtattttagtcatttttagactcaagg 14566032  T
Q  174 gtattttggtcatttgacgaatgaaggtgaactagtcattttattaagaaggtta 228  Q
    |||||||| |||||||| || | | ||| || |||||||||||||  ||||||||    
T  14566033 gtattttgatcatttgatgagtaagggtaaaatagtcattttatttggaaggtta 14566087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 18027872 - 18027932
Alignment:
Q  75 atatgttcttgtgtgtgattatttatctccgtgtgtatttaatttgggactagtgaatttt 135  Q
    |||||| |||||||||||||||||||||| |||||||||| |||||||| ||||| |||||    
T  18027872 atatgtgcttgtgtgtgattatttatctctgtgtgtattttatttgggattagtggatttt 18027932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 226
Target Start/End: Complemental strand, 16896834 - 16896682
Alignment:
Q  75 atatgttcttgtgtgtgattatttatctccgtgtgtatttaatttgggactagtgaatttt-ggcatataatg-gtattttagtcattctcaggctcatc 172  Q
    |||||| ||||| |||||| | || |||| |||||||||| ||| |||| ||||||||||| ||| ||  | | |||||||||||||||| || ||||      
T  16896834 atatgtgcttgtatgtgatgaattgtctctgtgtgtattttattcgggattagtgaatttttggcttaagaagagtattttagtcattct-agactcagg 16896736  T
Q  173 ggtattttggtcatttgacgaatgaaggtgaactagtcattttattaagaaggt 226  Q
    |||||||||||||||||||||   | ||| || ||||||||||| | |||||||    
T  16896735 ggtattttggtcatttgacgatcaagggtaaaatagtcattttagttagaaggt 16896682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 294
Target Start/End: Complemental strand, 23300046 - 23300001
Alignment:
Q  249 cattatgacaattagaaatcaaactcaattaagatgtgactatata 294  Q
    |||||||||||||||||| | | |||||||||||||||||| ||||    
T  23300046 cattatgacaattagaaacctatctcaattaagatgtgactctata 23300001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 23300315 - 23300226
Alignment:
Q  105 gtgtgtatttaatttgggactagtgaattttgg-catataatggtattttagtcattctcaggctcatcggtattttggtcatttgacga 193  Q
    |||||||||| |||||||| | ||| ||||| | | ||||| ||||||||||||||| | || || |  |||||||||||||||||||||    
T  23300315 gtgtgtattttatttgggatttgtggatttttgacctataagggtattttagtcattttaagactaaggggtattttggtcatttgacga 23300226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 14894581 - 14894471
Alignment:
Q  75 atatgttcttgtgtgtgattatttatctccgtgtgtatttaatttgggactagtgaattttggcatataatggtattttagtcattctcaggctcatcgg 174  Q
    |||||| ||||| | ||||||||| ||||  ||||||||| ||||||||  |||| ||||||||   ||| |||| |||||||||| | || ||||  ||    
T  14894581 atatgtgcttgtatatgattatttgtctcaatgtgtattttatttgggatcagtggattttggc---taagggtaatttagtcatttt-agactcaaggg 14894486  T
Q  175 tattttggtcatttg 189  Q
    |||||||||||||||    
T  14894485 tattttggtcatttg 14894471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 23224413 - 23224454
Alignment:
Q  313 gagaaaattaggttttcccattcattcattcacttcacaaaatatt 358  Q
    ||||||||||||||||||    ||||||||||||||||||||||||    
T  23224413 gagaaaattaggttttcc----cattcattcacttcacaaaatatt 23224454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 16228677 - 16228609
Alignment:
Q  226 ttagtttataagaatgttaaactcattatgacaattagaaatcaaactcaattaagatgtgactatata 294  Q
    |||||| ||||||||||| | |||||||||||||||||||| | | ||||||||||| |||||||||||    
T  16228677 ttagttaataagaatgtttagctcattatgacaattagaaacctagctcaattaagaggtgactatata 16228609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 12518849 - 12518812
Alignment:
Q  320 ttaggttttcccattcattcattcacttcacaaaatatt 358  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  12518849 ttaggttttcc-attcattcattcacttcacaaaatatt 12518812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 160
Target Start/End: Original strand, 18830025 - 18830111
Alignment:
Q  75 atatgttcttgtgtgtgattatttatctccgtgtgtatttaatttgggactagtgaattttggcat-ataatggtattttagtcatt 160  Q
    |||||| ||||| ||| |||| || |||| ||||||||||| || |||| ||||| |||||||| | | ||||||||||||||||||    
T  18830025 atatgtgcttgtatgtaattaattgtctctgtgtgtatttatttcgggattagtggattttggcttgaaaatggtattttagtcatt 18830111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 23539709 - 23539762
Alignment:
Q  82 cttgtgtgtgattatttatctccgtgtgtatttaatttgggactagtgaatttt 135  Q
    ||||| |||||||||||||||  |||||||||| ||| |||| |||||||||||    
T  23539709 cttgtatgtgattatttatctatgtgtgtattttattcgggattagtgaatttt 23539762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 15712204 - 15712123
Alignment:
Q  82 cttgtgtgtgattatttatctccgtgtgtatttaatttgggactagtg-aattttggcatataatggtattttagtcattct 162  Q
    |||||||||||||| ||  ||  |||||||||| |||||||| ||||| ||||||||||| ||| |||||||||||||||||    
T  15712204 cttgtgtgtgattaattgcctttgtgtgtattttatttgggattagtggaattttggcatgtaacggtattttagtcattct 15712123  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 228
Target Start/End: Original strand, 6188981 - 6189105
Alignment:
Q  105 gtgtgtatttaatttgggactagtgaatttt-ggcatataatggtattttagtcattctcaggctcatcggtattttggtcatttgacgaatgaaggtga 203  Q
    |||||||||| |||||||| ||||||||||| ||| || ||  |||||||| ||||| | |  |  |  |||| |||||||||||||||| | ||||| |    
T  6188981 gtgtgtatttgatttgggattagtgaatttttggcctagaagagtattttaatcatttttaaacaaaggggtactttggtcatttgacgagtaaaggtaa 6189080  T
Q  204 actagtcattttattaagaaggtta 228  Q
    | ||| |||||||||||||||||||    
T  6189081 attagccattttattaagaaggtta 6189105  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 16571642 - 16571582
Alignment:
Q  293 tatataaacataattcttgtgagaaaattaggttttcccattcattcattcacttcacaaa 353  Q
    |||||||||| || |||||||||||||||||||  |  |||||||||| ||| ||||||||    
T  16571642 tatataaacacaactcttgtgagaaaattaggtcattacattcattcactcatttcacaaa 16571582  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 340
Target Start/End: Original strand, 15044827 - 15044929
Alignment:
Q  234 taagaatgttaaactcattatgacaattagaaatcaaactcaattaagatgtgactatatatataaacataattcttgtgagaaaattaggttttcccat 333  Q
    |||||||||||| ||||||| |||||||||||| ||| | || || ||||||||     |||||||||| ||  |||||||||||||||||||||  |||    
T  15044827 taagaatgttaagctcattaagacaattagaaaccaagcccatttgagatgtga----ttatataaacacaacacttgtgagaaaattaggtttttacat 15044922  T
Q  334 tcattca 340  Q
    |||||||    
T  15044923 tcattca 15044929  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 11677177 - 11677252
Alignment:
Q  86 tgtgtgattatttatctccgtgtgtatttaatttgggactagt-gaattttggcatataatggtattttagtcatt 160  Q
    |||||| |||||| |||  ||||||||||||||||||| |||| || ||||||| ||||| |||||||||||||||    
T  11677177 tgtgtgcttatttgtctttgtgtgtatttaatttgggattagtggatttttggcctataagggtattttagtcatt 11677252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 160
Target Start/End: Original strand, 19631335 - 19631421
Alignment:
Q  75 atatgttcttgtgtgtgattatttatctccgtgtgtatttaatttgggactag-tgaattttggcatataatggtattttagtcatt 160  Q
    |||||| |||||||||||||| || |||| |||||||||||||| |||| ||| ||| ||| ||| || || |||||||||||||||    
T  19631335 atatgtgcttgtgtgtgattaattgtctctgtgtgtatttaattcgggattagttgattttaggcctagaagggtattttagtcatt 19631421  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 11832317 - 11832431
Alignment:
Q  75 atatgttcttgtgtgtgattatttatctccgtgtgtatttaatttgggactagtgaattttggcat-ataatggtattttagtcattctcaggctcatcg 173  Q
    |||||| ||||| ||||||||||| ||||  ||||||||| ||| |||| |||||||||||| | | | || ||||||||| ||||| | || ||||  |    
T  11832317 atatgtgcttgtatgtgattatttgtctctatgtgtattttattcgggattagtgaattttgacttaagaagggtattttattcattat-agactcaggg 11832415  T
Q  174 gtattttggtcatttg 189  Q
    ||||||||||||||||    
T  11832416 gtattttggtcatttg 11832431  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 318
Target Start/End: Complemental strand, 15540498 - 15540418
Alignment:
Q  234 taagaatgttaaactcattatgacaattagaaatcaaactcaattaagatgtgactatatatataaacataattcttgtgagaaa 318  Q
    |||||||||||| | ||||| |||||||||||| | ||| ||||||||  |||||||    ||||||||||| ||||||||||||    
T  15540498 taagaatgttaagcccattaagacaattagaaacctaacccaattaagtggtgacta----tataaacataactcttgtgagaaa 15540418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 228
Target Start/End: Complemental strand, 18747405 - 18747262
Alignment:
Q  86 tgtgtgattatttatctccgtgtgtatttaatttgggactagtg-aattttggcatataatggtattttagtcattctcaggctcatcggtattttggtc 184  Q
    ||||||||||||| |||  ||| |||||| ||||| ||  |||| |||||||   || || ||||||||||||||| | || || |  ||||||||||||    
T  18747405 tgtgtgattatttgtctttgtgcgtattttatttgagatcagtggaattttgaactagaagggtattttagtcatttttagactaaagggtattttggtc 18747306  T
Q  185 atttgacgaatgaaggtgaactagtcattttattaagaaggtta 228  Q
    ||||| ||| | | ||| || ||||||||||||| |||||||||    
T  18747305 atttggcgagtaagggtaaattagtcattttattgagaaggtta 18747262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 11829251 - 11829190
Alignment:
Q  75 atatgttcttgtgtgtgattatttatctccgtgtgtatttaatttgggactagtgaattttg 136  Q
    |||| ||||||| |||||||||||||||| |||||||||| |||  ||| ||||| ||||||    
T  11829251 atatattcttgtatgtgattatttatctctgtgtgtattttattcaggattagtggattttg 11829190  T

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Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 189
Target Start/End: Original strand, 204147 - 204254
Alignment:
Q  83 ttgtgtgtgattatttatctccgtgtgtatttaatttgggactagtgaattttgg-catataatggtattttagtcattctcaggctcatcggtattttg 181  Q
    |||||||||||||||||| ||  |||||| || ||| |||| ||||| ||||| | | || |||||||||||||||||| | || ||||  |||||||||    
T  204147 ttgtgtgtgattatttatatctttgtgtaatttattcgggattagtggatttttgacttagaatggtattttagtcattttaagactcagaggtattttg 204246  T
Q  182 gtcatttg 189  Q
    ||||||||    
T  204247 gtcatttg 204254  T

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Target: scaffold0004 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 370745 - 370819
Alignment:
Q  86 tgtgtgattatttatctccgtgtgtatttaatttgggactagtgaattttggcatataatggtattttagtcatt 160  Q
    |||||||||| || || | |||||||||| |||||||| ||||| |||||||| || || |||||||||||||||    
T  370745 tgtgtgattaattgtccctgtgtgtattttatttgggattagtggattttggcttaaaagggtattttagtcatt 370819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 19285360 - 19285282
Alignment:
Q  83 ttgtgtgtgattatttatctccgtgtgtatttaatttgggactagt-gaattttggcatataatggtattttagtcatt 160  Q
    ||||||||||||| || |||| |||||||||| |||||||| | || || ||||||| ||||| |||||||||||||||    
T  19285360 ttgtgtgtgattaattgtctctgtgtgtattttatttgggatttgtggatttttggcctataagggtattttagtcatt 19285282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 158
Target Start/End: Original strand, 19901711 - 19901795
Alignment:
Q  75 atatgttcttgtgtgtgattatttatctccgtgtgtatttaatttgggactagt-gaattttggcatataatggtattttagtca 158  Q
    |||||||||||| |||||||| || |||  |||||||||| |||||||| |||| || ||||||| || || |||||||||||||    
T  19901711 atatgttcttgtatgtgattaattttctttgtgtgtattttatttgggattagtggatttttggcttaaaagggtattttagtca 19901795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 189
Target Start/End: Complemental strand, 28775013 - 28774914
Alignment:
Q  90 tgattatttatctccgtgtgtatttaatttgggactagtgaattttggcatat-aatggtattttagtcattctcaggctcatcggtattttggtcattt 188  Q
    ||||||||| |||  |||||||||| |||  ||| ||||| |||||||| ||  || ||||||||||||||| | |||||||| ||||||||||||||||    
T  28775013 tgattatttgtctgtgtgtgtattttattcaggattagtggattttggcttaagaagggtattttagtcatttt-aggctcatgggtattttggtcattt 28774915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 298
Target Start/End: Complemental strand, 19285088 - 19285016
Alignment:
Q  226 ttagtttataagaatgttaaactcattatgacaattagaaatcaaactcaattaagatgtgactatatatata 298  Q
    |||||| || |||||| ||| |||||||||||||||||||  | ||| |||||| || |||| ||||||||||    
T  19285088 ttagttaatgagaatgctaatctcattatgacaattagaagcctaacccaattatgaggtgattatatatata 19285016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 189
Target Start/End: Complemental strand, 21654993 - 21654885
Alignment:
Q  82 cttgtgtgtgattatttatctccgtgtgtatttaatttgggactagtgaa-ttttggcatataatggtattttagtcattctcaggctcatcggtatttt 180  Q
    ||||||||||| ||||| | || |||||||||| ||||| || ||||||| ||||||| || ||  |||||||||||||| | || || |  ||||||||    
T  21654993 cttgtgtgtgactatttgtatctgtgtgtattttatttgtgattagtgaatttttggcctagaagagtattttagtcatttttagacttaggggtatttt 21654894  T
Q  181 ggtcatttg 189  Q
    | |||||||    
T  21654893 gatcatttg 21654885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 358
Target Start/End: Original strand, 34133951 - 34133992
Alignment:
Q  315 gaaaattaggttttcccattcattcattcacttcacaaaatatt 358  Q
    ||||||||||||| |  |||||||||||||||||||||||||||    
T  34133951 gaaaattaggtttac--attcattcattcacttcacaaaatatt 34133992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 202247 - 202361
Alignment:
Q  75 atatgttcttgtgtgtgattatttatctccgtgtgtatttaatttgggactagtgaattttggcat-ataatggtattttagtcattctcaggctcatcg 173  Q
    |||||| ||||| |||||| |||| |||| |||||||||| |||  ||| |||||||||||||| | | || ||||||||||||||| | |||||||  |    
T  202247 atatgtgcttgtatgtgat-atttgtctctgtgtgtattttattcaggattagtgaattttggcttaagaagggtattttagtcatt-ttaggctcaggg 202344  T
Q  174 gtattttggtcatttga 190  Q
    || ||||||||||||||    
T  202345 gttttttggtcatttga 202361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 19758 - 19703
Alignment:
Q  173 ggtattttggtcatttgacgaatgaaggtgaactagtcattttattaagaaggtta 228  Q
    |||||||||||||||||  || | ||||| || |||||||||||||||||||||||    
T  19758 ggtattttggtcatttggtgagtaaaggtaaattagtcattttattaagaaggtta 19703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 20408782 - 20408667
Alignment:
Q  75 atatgttcttgtgtgtgattatttatctccgtgtgtatttaatttgggactagtgaattttggcatat-aatggtattttagtcattctcaggctcatcg 173  Q
    ||||||| |||||||||||||||| |||  |||||||| | |||||| | | ||  |||||||| ||  || ||||||||||||||| |||| |||   |    
T  20408782 atatgtttttgtgtgtgattatttgtctatgtgtgtatattatttggtattggtcgattttggcttaagaagggtattttagtcattttcagactcggag 20408683  T
Q  174 gtattttggtcatttg 189  Q
    ||||||||||||||||    
T  20408682 gtattttggtcatttg 20408667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 359
Target Start/End: Complemental strand, 21720700 - 21720634
Alignment:
Q  293 tatataaacataattcttgtgagaaaattaggttttcccattcattcattcacttcacaaaatattg 359  Q
    |||||||||| ||  ||||| |||||||||||| ||  |||||||||| ||| ||||||||||||||    
T  21720700 tatataaacacaacacttgtaagaaaattaggtctttacattcattcactcatttcacaaaatattg 21720634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 160
Target Start/End: Complemental strand, 21981599 - 21981513
Alignment:
Q  75 atatgttcttgtgtgtgattatttatctccgtgtgtatttaatttgggactagtgaattttggcat-ataatggtattttagtcatt 160  Q
    |||||| ||||| ||||||||||| ||||  ||||||| | ||| |||| ||||| |||||||| | | ||||||||||||||||||    
T  21981599 atatgtgcttgtatgtgattatttgtctcactgtgtatattattcgggattagtggattttggcttaagaatggtattttagtcatt 21981513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0672 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 228
Target Start/End: Original strand, 4967 - 5064
Alignment:
Q  132 ttttggcatataatggtattttagtcattctcaggctcatcggtattttggtcatttgacgaatgaagg-tgaactagtca-ttttattaagaaggtta 228  Q
    ||||||| || || ||||||||||||||| | || || |  |||||||||||||||||||| ||||||| | || |||||| |||||||||||||||||    
T  4967 ttttggcctagaaaggtattttagtcatttttagactaaggggtattttggtcatttgacg-atgaaggataaagtagtcatttttattaagaaggtta 5064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 266
Target Start/End: Complemental strand, 4131 - 4098
Alignment:
Q  233 ataagaatgttaaactcattatgacaattagaaa 266  Q
    ||||||||||||| ||||||||||||||||||||    
T  4131 ataagaatgttaagctcattatgacaattagaaa 4098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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