View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2295_low_2 (Length: 586)
Name: NF2295_low_2
Description: NF2295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2295_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 70 - 525
Target Start/End: Complemental strand, 40797084 - 40796629
Alignment:
| Q |
70 |
agaaacaaaggcccttgtgcttctaatgacaattaaaaacatatctatgcgccaaggtttacaaccctctttgaatatcacattgtccactctatggttt |
169 |
Q |
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| T |
40797084 |
agaaacaaaggcccttgtgcttctaatgacaattaaaaacatatctatgcggcaaggtatacaaccctctttgaatatcacattgtccactctatggttt |
40796985 |
T |
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| Q |
170 |
agacttagagtgaatcaacaatagcccaattcttattcaacacagtacaaagtaaaactacagtggtttaatcttcaattccatcgaaaagtagccagca |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40796984 |
agacttagagtgaatcaacaatagcccaattcttattcaacacagtacaaagtaaaaccacagtggtttaatcttcaattccatcgaaaagtagccagca |
40796885 |
T |
|
| Q |
270 |
ttttagaacttcaagcaatttgcccaaccttgaaacctatagattaaactcaatataactaaaagattatcaacattatagttcctgtcgtggtcctatt |
369 |
Q |
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| T |
40796884 |
ttttagaacttcaagcaatttgcccaaccttgaaacctatagattaaactcaatataattaaaagattatcaacattatagttcctgtcgtggtcctatt |
40796785 |
T |
|
| Q |
370 |
gctatcacaaaagaaaacaacgccctaaaagaatgaaagcacatgacaccagaatacaaaacaacaaagactggtaggcttagagaggatacatacatgc |
469 |
Q |
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| T |
40796784 |
gctatcacaaaagaaaacaacgccctaaaagaatgaaagcacatgacaccagaatacaaaacaacaaagactggtaggcttagagaggatacatacatgc |
40796685 |
T |
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| Q |
470 |
ttataggctatagcactctccctcatgtaagcagacacggaactcggtgcaatttg |
525 |
Q |
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| T |
40796684 |
ttataggctatagcactctccctcatgtaagcagacacagaactcggtgcaatttg |
40796629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 522 - 557
Target Start/End: Complemental strand, 40796587 - 40796552
Alignment:
| Q |
522 |
tttgacaaattggagctttgtaaagagaataaaccc |
557 |
Q |
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| T |
40796587 |
tttgacaaattggagctttgtaaagagaataaaccc |
40796552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 286 - 437
Target Start/End: Complemental strand, 18307703 - 18307559
Alignment:
| Q |
286 |
aatttgcccaaccttgaaacctatagattaaactcaatataactaaaagattatcaacattatagttcctgtcgtggtcctattgctatcac--aaaaga |
383 |
Q |
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| T |
18307703 |
aatttgcccaacgtttaaacatatagattaagctcaatataattaaaagatgat---------agttcctggcagggtcctattgctatcaatgaaaaga |
18307613 |
T |
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| Q |
384 |
aaacaacgccctaaaagaatgaaagcacatgacaccagaatacaaaacaacaaa |
437 |
Q |
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| T |
18307612 |
aaacaatgccctaaagtaatgaaagcacatgacaccgaaatacaaaacaacaaa |
18307559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 361 - 437
Target Start/End: Original strand, 783274 - 783351
Alignment:
| Q |
361 |
ggtcctattgctatcacaaaagaaaacaacgccctaaaagaatgaaagcacatgac-accagaatacaaaacaacaaa |
437 |
Q |
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|||||||||||||||||||| |||||||||||| ||||||||||||||||||||| || | |||||||||||||||| |
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| T |
783274 |
ggtcctattgctatcacaaaggaaaacaacgccggaaaagaatgaaagcacatgacaacgaaaatacaaaacaacaaa |
783351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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