View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2295_low_21 (Length: 306)
Name: NF2295_low_21
Description: NF2295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2295_low_21 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 72 - 306
Target Start/End: Complemental strand, 40797474 - 40797241
Alignment:
| Q |
72 |
catcatcctgttagcccttatattgaacaattaactcaaatgtagaattcatggatacatcaaactgtgtagcatgtgctatgctggcgatgttatttaa |
171 |
Q |
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| T |
40797474 |
catcatcctgttagccctgatattgaacaatgaactcaaatgtagaattcatggatacatcaaactgtgtagcatgtgctatgctggcgatgttatttaa |
40797375 |
T |
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| Q |
172 |
cgtaccacattactaccctcatttattcttaaaatctactctctaaatccttcaagatcactgcataagttgataaatgttttgttaaccacaaacttgg |
271 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40797374 |
cgtaccacgttactaccctcatttattcttaaaatctactctctaaatccttcaagatcactgcataagttgataaatgttttgtcaaccacaaacttgg |
40797275 |
T |
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| Q |
272 |
aggttaaacatctcaatgaacttcaaaattaaaaa |
306 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
40797274 |
aggttaaacatc-caatgaacttcaaaattaaaaa |
40797241 |
T |
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