View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2295_low_28 (Length: 257)
Name: NF2295_low_28
Description: NF2295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2295_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 16439729 - 16439483
Alignment:
| Q |
1 |
taaccattctcaactgacatagtgctatttaaatcttgaaatgctgtagaggagaaataccattcatgccttttgatttgaagtagactatacaatctga |
100 |
Q |
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| T |
16439729 |
taaccattctcaactgacatagtgctatttaaatcttgaaatgctgtagaggagaaataccattcatgccttttgatttgaagtagactatacaatctga |
16439630 |
T |
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| Q |
101 |
tattaaagtttctctatattttgcagagttctcttcagataatagttcctttatgggaccataaatccttgtagatggatgaagactagtgctaaaaaag |
200 |
Q |
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| T |
16439629 |
tattaaagtttctctatattttgcagagttctcttcagataatagttcctttatgggaccataaatccttgtagatggatgaagactagtgctaaaaaag |
16439530 |
T |
|
| Q |
201 |
ctcccaatagagactcttggacctacaagatttgcctttactctgtg |
247 |
Q |
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| T |
16439529 |
ctcccaatagagactcttggacctacaagatttgcctttaccctgtg |
16439483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 94 - 247
Target Start/End: Original strand, 16441746 - 16441899
Alignment:
| Q |
94 |
aatctgatattaaagtttctctatattttgcagagttctcttcagataatagttcctttatgggaccataaatccttgtagatggatgaagactagtgct |
193 |
Q |
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| T |
16441746 |
aatctgaaattgaagtttctctatattttgcaggattgtcttcagataatagttccttgatgggaccataaatccttgtagttggatgatgacgagtgct |
16441845 |
T |
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| Q |
194 |
aaaaaagctcccaatagagactcttggacctacaagatttgcctttactctgtg |
247 |
Q |
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| T |
16441846 |
aaaaaaacatgcaatagagactcttggacctacgagatttgacagtactctgtg |
16441899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 94 - 247
Target Start/End: Original strand, 16425461 - 16425614
Alignment:
| Q |
94 |
aatctgatattaaagtttctctatattttgcagagttctcttcagataatagttcctttatgggaccataaatccttgtagatggatgaagactagtgct |
193 |
Q |
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||||||| ||| ||||||||||||||||||||| || ||||| |||||||||||||| |||||||||||||||||||||| ||||||| ||| |||||| |
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| T |
16425461 |
aatctgaaattgaagtttctctatattttgcaggattgtcttcggataatagttccttgatgggaccataaatccttgtagttggatgatgacgagtgct |
16425560 |
T |
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| Q |
194 |
aaaaaagctcccaatagagactcttggacctacaagatttgcctttactctgtg |
247 |
Q |
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|
| T |
16425561 |
aaaaaaacatgcaatagagactcttggacctacgagatttgacagtactctgtg |
16425614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 106 - 235
Target Start/End: Original strand, 16414195 - 16414324
Alignment:
| Q |
106 |
aagtttctctatattttgcagagttctcttcagataatagttcctttatgggaccataaatccttgtagatggatgaagactagtgctaaaaaagctccc |
205 |
Q |
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|||||||| |||||||||||||||| || ||||||||||||||||| ||||||||| | ||||||||| ||||||| | |||| ||||||||| | |
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| T |
16414195 |
aagtttctttatattttgcagagttttcatcagataatagttccttgatgggaccaaatgtccttgtagttggatgatgcagtgtgccaaaaaagcttgc |
16414294 |
T |
|
| Q |
206 |
aatagagactcttggacctacaagatttgc |
235 |
Q |
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|
| T |
16414295 |
aatagagactcttggacctacaagatttgc |
16414324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 16418613 - 16418658
Alignment:
| Q |
189 |
gtgctaaaaaagctcccaatagagactcttggacctacaagatttg |
234 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
16418613 |
gtgccaaaaaagcttgcaatagagactcttggacctacaagatttg |
16418658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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