View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2295_low_31 (Length: 252)
Name: NF2295_low_31
Description: NF2295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2295_low_31 |
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| [»] chr5 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 32 - 252
Target Start/End: Complemental strand, 26839997 - 26839777
Alignment:
| Q |
32 |
ataaataatttttgtttgtgtgctgcatatagtatgctctaaaaatttagtttgaaatgaaataataggatttgaagtgtgactcatgttgcatttgtgc |
131 |
Q |
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| T |
26839997 |
ataaataatttttgtttgtgtgctgcatatattatgctctaaaaatttagtttgaaatgaaataatagcatttgaagtgtgactcatgttgcatttgtgc |
26839898 |
T |
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| Q |
132 |
gattgttaaggtaagctgactttgtctttaattgtcttgacaggtatgcgaagggatttagatagcatttttacattgacaaacttgattttagaggtag |
231 |
Q |
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| T |
26839897 |
gattgttaaggtgagctaactttgtttttaattgtcttgacaggtatgcgaagggatttagatagcatttttacattgacaaacttgattttagaggtag |
26839798 |
T |
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| Q |
232 |
tgtcttacaattctatagttc |
252 |
Q |
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||||||||||||||||||||| |
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| T |
26839797 |
tgtcttacaattctatagttc |
26839777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 40 - 143
Target Start/End: Complemental strand, 34507736 - 34507633
Alignment:
| Q |
40 |
tttttgtttgtgtgctgcatatagtatgctctaaaaatttagtttgaaatgaaataataggatttgaagtgtgactcatgttgcatttgtgcgattgtta |
139 |
Q |
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||||||||||||||||||||||| ||||||||| || ||| |||||||||||||||| ||||||||| ||||||| ||||||||||| |||||||||| |
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| T |
34507736 |
tttttgtttgtgtgctgcatatattatgctctagaattttgatttgaaatgaaataatgggatttgaaatgtgacttatgttgcatttttgcgattgttg |
34507637 |
T |
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| Q |
140 |
aggt |
143 |
Q |
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| T |
34507636 |
aggt |
34507633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 39 - 252
Target Start/End: Complemental strand, 50975087 - 50974874
Alignment:
| Q |
39 |
atttttgtttgtgtgctgcatatagtatgctctaaaaatttagtttgaaatgaaataataggatttgaagtgtgactcatgttgcatttgtgcgattgtt |
138 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50975087 |
atttttgtttgtgtgctgcatatattatgctctaaaaattttgtttgaaatgaaataataggatttgaagtgtgactcatgttgcatttgtgcgattgtt |
50974988 |
T |
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| Q |
139 |
aaggtaagctgactttgtctttaattgtcttgacaggtatgcgaagggatttagatagcatttttacattgacaaacttgattttagaggtagtgtctta |
238 |
Q |
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| T |
50974987 |
aaggtgagctgactttgtttttaattgtcttgacatgtatgcgaagggatttagatagcatttttacattcacagacttgattttagaggtagtgtctta |
50974888 |
T |
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| Q |
239 |
caattctatagttc |
252 |
Q |
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|||||||||||||| |
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| T |
50974887 |
caattctatagttc |
50974874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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