View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2295_low_33 (Length: 250)
Name: NF2295_low_33
Description: NF2295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2295_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 30515820 - 30515605
Alignment:
| Q |
16 |
atcacagataatttccctcaaagcacacaatatggagagaaaaaccatactatggaaaaagatacaaaaatccatagatgataacaattcagattcacac |
115 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30515820 |
atcacagataatttcactcaaagcacacaatatggagagaaaaaccatactatggaaaaagatacaaaaatccatagatgataacaattcagattcacac |
30515721 |
T |
|
| Q |
116 |
catacacttaaaccagcacttcaagcaatcatgtgtgaaaagagttcagaaaatcaagattttcaagactcatcaacttcacctagaaaggaaaagtcat |
215 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30515720 |
catacacttaaacctgcacttcaagcaatcatgtgtgaaaagagttcagaaaatcaagattttcaagactcatcaacttcacctagaaaggaaaagtcat |
30515621 |
T |
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| Q |
216 |
caatagttttgccacc |
231 |
Q |
| |
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|||||||||||||||| |
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| T |
30515620 |
caatagttttgccacc |
30515605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 30556160 - 30555945
Alignment:
| Q |
16 |
atcacagataatttccctcaaagcacacaatatggagagaaaaaccatactatggaaaaagatacaaaaatccatagatgataacaattcagattcacac |
115 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30556160 |
atcacagataatttcactcaaagcacacaatatggagagaaaaaccatactatggaaaaagatacaaaaatccatagatgataacaattcagattcacac |
30556061 |
T |
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| Q |
116 |
catacacttaaaccagcacttcaagcaatcatgtgtgaaaagagttcagaaaatcaagattttcaagactcatcaacttcacctagaaaggaaaagtcat |
215 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30556060 |
catacacttaaacctgcacttcaagcaatcatgtgtgaaaagagttcagaaaatcaagattttcaagactcatcaacttcacctagaaaggaaaagtcat |
30555961 |
T |
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| Q |
216 |
caatagttttgccacc |
231 |
Q |
| |
|
|||||||||||||||| |
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| T |
30555960 |
caatagttttgccacc |
30555945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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