View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2295_low_36 (Length: 224)
Name: NF2295_low_36
Description: NF2295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2295_low_36 |
 | |
|
| [»] chr8 (9 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 6353139 - 6353361
Alignment:
| Q |
2 |
aggaagcttaattccaccctcgtagagagagcgcacatcttgaaaggtgttgaactccgggttattgagttgtaacgtaactacagatctcaattgaggt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
6353139 |
aggaagcttaattccaccctcgtagagagagcgcacatcttgaaaggtgttaaactcagggttattgagttgtaatgtaactacagatctcagttgaggt |
6353238 |
T |
|
| Q |
102 |
atgacattctgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtccaaatgattcatctcttggaaggtaaacagtgggacttc |
201 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6353239 |
atgacattttgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtccaaaagattcatctcttggaaggtaaacagtgggacttc |
6353338 |
T |
|
| Q |
202 |
gagtctcactcttaggatctgtt |
224 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
6353339 |
gagtctcactcttaggatctgtt |
6353361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 6363935 - 6364157
Alignment:
| Q |
2 |
aggaagcttaattccaccctcgtagagagagcgcacatcttgaaaggtgttgaactccgggttattgagttgtaacgtaactacagatctcaattgaggt |
101 |
Q |
| |
|
||||||| | |||||||| || ||||| ||||||||||||| ||||||||| ||||| || | || || |||||| ||||||| |||||| ||| ||||| |
|
|
| T |
6363935 |
aggaagcctgattccaccttcatagagcgagcgcacatcttcaaaggtgttaaactcaggctcatggaattgtaatgtaactatagatcttaatcgaggt |
6364034 |
T |
|
| Q |
102 |
atgacattctgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtccaaatgattcatctcttggaaggtaaacagtgggacttc |
201 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
6364035 |
atgacattttgagatgcagatttgagtatgtgaacaagaaagtctgatgactttgtgtgtccaaatgattcatctcttgggaggtaaacagtgtcacttc |
6364134 |
T |
|
| Q |
202 |
gagtctcactcttaggatctgtt |
224 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
6364135 |
gactctcactcttaggatctgtt |
6364157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 7460037 - 7460259
Alignment:
| Q |
2 |
aggaagcttaattccaccctcgtagagagagcgcacatcttgaaaggtgttgaactccgggttattgagttgtaacgtaactacagatctcaattgaggt |
101 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | ||||| ||||||||| ||||| ||||||||||||||||| ||| || ||||||||| | |||| |
|
|
| T |
7460037 |
aggaagcttaattccaccatcgtagagagagcgtatatcttcaaaggtgttaaactcagggttattgagttgtaatgtagctttagatctcaaattaggt |
7460136 |
T |
|
| Q |
102 |
atgacattctgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtccaaatgattcatctcttggaaggtaaacagtgggacttc |
201 |
Q |
| |
|
||||| | |||| |||||||||||||| ||| |||||||||| |||||||| ||| |||||||||||||||||||||| ||||| || | ||||| |
|
|
| T |
7460137 |
atgactctgtgagttgctgatttgagtacataaccaagaaagtcagatgacttcaagtgaccaaatgattcatctcttggaacgtaaatagcgtcacttc |
7460236 |
T |
|
| Q |
202 |
gagtctcactcttaggatctgtt |
224 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
7460237 |
gactctcactcttaggatctgtt |
7460259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 79 - 223
Target Start/End: Original strand, 6424890 - 6425034
Alignment:
| Q |
79 |
taactacagatctcaattgaggtatgacattctgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtccaaatgattcatctct |
178 |
Q |
| |
|
||||||||||| |||| |||||||| ||| ||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
6424890 |
taactacagatttcaaggaaggtatgatattttgagatgctgatttgagtatgaaagcaagaaagtctgaagactttgtgtgtccaaatgcctcatctct |
6424989 |
T |
|
| Q |
179 |
tggaaggtaaacagtgggacttcgagtctcactcttaggatctgt |
223 |
Q |
| |
|
|||||||||||||||| || ||| ||||||||||||||||||| |
|
|
| T |
6424990 |
tggaaggtaaacagtgccgctccgactctcactcttaggatctgt |
6425034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 189
Target Start/End: Original strand, 7471615 - 7471800
Alignment:
| Q |
2 |
aggaagcttaattccaccctcgtagagagagcgcacatcttgaaaggtgttgaactccgggttattgagttgtaacgtaactacagatctcaattgaggt |
101 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || ||||| ||||||||| ||||| ||||||||||||||||| |||||| ||||||||| | ||| |
|
|
| T |
7471615 |
aggaagcttaattccaccatcgtagagagatcgtgtatcttcaaaggtgttaaactcggggttattgagttgtaatgtaactttagatctcaaattaggc |
7471714 |
T |
|
| Q |
102 |
atgacattctgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtccaaatgattcatctcttggaaggtaaa |
189 |
Q |
| |
|
||||| |||||| |||||||||||||| ||| |||||||||| |||||||| ||| |||||||||||||||||||||| ||||| |
|
|
| T |
7471715 |
atgac--tctgagttgctgatttgagtacataaccaagaaagtcagatgacttcaagtgaccaaatgattcatctcttggaacgtaaa |
7471800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 191
Target Start/End: Original strand, 6332781 - 6332936
Alignment:
| Q |
36 |
acatcttgaaaggtgttgaactccgggttattgagttgtaacgtaactacagatctcaattgaggtatgacattctgagatgctgatttgagtatgtaaa |
135 |
Q |
| |
|
||||||| ||| ||||| ||||| || | ||||| |||||| |||| | |||||| ||||||||||| ||||| |||||||||||||| ||||| |||| |
|
|
| T |
6332781 |
acatcttcaaaagtgttaaactctggctgattgaattgtaatgtaagtgcagatcgtaattgaggtataacattttgagatgctgatttcagtatataaa |
6332880 |
T |
|
| Q |
136 |
caagaaagtctgatgactttgtgtgtccaaatgattcatctcttggaaggtaaaca |
191 |
Q |
| |
|
||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||| |
|
|
| T |
6332881 |
caagaaagtctgaagacttcaagtggccaaatgattcatctcttggaatgtaaaca |
6332936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 189
Target Start/End: Original strand, 6275327 - 6275483
Alignment:
| Q |
33 |
cgcacatcttgaaaggtgttgaactccgggttattgagttgtaacgtaactacagatctcaattgaggtatgacattctgagatgctgatttgagtatgt |
132 |
Q |
| |
|
|||||||| | |||| |||| || || || ||||||| |||||| |||| | ||||| ||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
6275327 |
cgcacatcatcaaagctgttaaattctggcttattgaattgtaatgtaattgcagattgtaattgaggtatgacattttgagatactgatttgagtatgt |
6275426 |
T |
|
| Q |
133 |
aaacaagaaagtctgatgactttgtgtgtccaaatgattcatctcttggaaggtaaa |
189 |
Q |
| |
|
|||||||||| ||||| ||||| ||| ||||||||||||||||||||||| |||| |
|
|
| T |
6275427 |
aaacaagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaa |
6275483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 63 - 191
Target Start/End: Original strand, 6322224 - 6322352
Alignment:
| Q |
63 |
ttattgagttgtaacgtaactacagatctcaattgaggtatgacattctgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtc |
162 |
Q |
| |
|
|||||||||||||| |||| | ||||| ||||||||||||| | | ||||| |||||||||||||||||||||||||| ||||| ||||| ||| | |
|
|
| T |
6322224 |
ttattgagttgtaatgtaattgcagattgtaattgaggtatgaaactttgagaagctgatttgagtatgtaaacaagaaaatctgaagacttcaagtgac |
6322323 |
T |
|
| Q |
163 |
caaatgattcatctcttggaaggtaaaca |
191 |
Q |
| |
|
|||||| |||||||||||||| ||||||| |
|
|
| T |
6322324 |
caaatgcttcatctcttggaacgtaaaca |
6322352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 6289828 - 6289908
Alignment:
| Q |
111 |
tgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtccaaatgattcatctcttggaaggtaaaca |
191 |
Q |
| |
|
|||||||||||||| |||| || | ||||||| ||||| ||||| |||| ||||||||||||||||||||| ||||||| |
|
|
| T |
6289828 |
tgagatgctgatttcagtaggttatcaagaaattctgaagacttcttgtgatcaaatgattcatctcttggaatgtaaaca |
6289908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University