View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2295_low_4 (Length: 513)

Name: NF2295_low_4
Description: NF2295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2295_low_4
NF2295_low_4
[»] chr4 (9 HSPs)
chr4 (14-484)||(40008245-40008715)
chr4 (299-350)||(56480341-56480392)
chr4 (298-351)||(23819081-23819134)
chr4 (298-351)||(36722694-36722747)
chr4 (298-380)||(2996565-2996644)
chr4 (301-352)||(3175946-3175997)
chr4 (315-352)||(6130707-6130744)
chr4 (298-343)||(28252222-28252267)
chr4 (306-351)||(47800623-47800668)
[»] chr5 (6 HSPs)
chr5 (264-352)||(10296372-10296457)
chr5 (307-351)||(17258908-17258952)
chr5 (298-340)||(14257457-14257499)
chr5 (298-351)||(4855690-4855743)
chr5 (420-452)||(17369315-17369347)
chr5 (298-342)||(18543230-18543274)
[»] chr7 (11 HSPs)
chr7 (306-349)||(1350269-1350312)
chr7 (298-350)||(30456476-30456528)
chr7 (299-351)||(46104592-46104644)
chr7 (300-342)||(36370663-36370705)
chr7 (298-352)||(40439046-40439100)
chr7 (313-350)||(27378854-27378891)
chr7 (298-351)||(31338500-31338553)
chr7 (298-351)||(44151505-44151558)
chr7 (299-352)||(44821952-44822005)
chr7 (299-351)||(3610765-3610817)
chr7 (421-457)||(25670507-25670543)
[»] chr2 (14 HSPs)
chr2 (299-352)||(9477945-9477998)
chr2 (298-350)||(15377757-15377809)
chr2 (299-351)||(43985028-43985080)
chr2 (300-351)||(4026811-4026862)
chr2 (301-351)||(10563583-10563633)
chr2 (298-352)||(36863649-36863703)
chr2 (306-351)||(44644278-44644323)
chr2 (299-351)||(1899934-1899986)
chr2 (303-351)||(6988112-6988160)
chr2 (264-300)||(13864589-13864625)
chr2 (421-449)||(23142499-23142527)
chr2 (421-449)||(23554289-23554317)
chr2 (298-350)||(39983334-39983386)
chr2 (298-342)||(43141863-43141907)
[»] chr1 (12 HSPs)
chr1 (298-347)||(25005826-25005875)
chr1 (298-351)||(27887143-27887196)
chr1 (299-351)||(43332477-43332529)
chr1 (300-351)||(37842380-37842431)
chr1 (298-352)||(7218098-7218152)
chr1 (313-351)||(38651456-38651494)
chr1 (301-342)||(2778661-2778702)
chr1 (298-351)||(30257675-30257728)
chr1 (300-337)||(44940335-44940372)
chr1 (299-351)||(4700091-4700143)
chr1 (299-351)||(34290229-34290281)
chr1 (263-342)||(50319230-50319306)
[»] chr8 (6 HSPs)
chr8 (421-452)||(10559981-10560012)
chr8 (220-258)||(8062208-8062246)
chr8 (306-352)||(39551233-39551279)
chr8 (298-351)||(6509328-6509381)
chr8 (298-351)||(10075576-10075629)
chr8 (299-351)||(9956839-9956891)
[»] chr3 (8 HSPs)
chr3 (421-452)||(2081009-2081040)
chr3 (298-352)||(24158527-24158581)
chr3 (301-351)||(40665424-40665474)
chr3 (306-351)||(20502093-20502138)
chr3 (298-351)||(52618995-52619048)
chr3 (299-351)||(1816576-1816628)
chr3 (299-351)||(34382935-34382987)
chr3 (266-351)||(36887463-36887549)
[»] scaffold0020 (1 HSPs)
scaffold0020 (298-340)||(160009-160051)
[»] chr6 (7 HSPs)
chr6 (302-352)||(25100039-25100089)
chr6 (298-351)||(1497973-1498026)
chr6 (315-348)||(29837112-29837145)
chr6 (298-351)||(33911307-33911360)
chr6 (421-453)||(13908353-13908385)
chr6 (299-351)||(26694871-26694923)
chr6 (299-351)||(31812038-31812090)


Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 14 - 484
Target Start/End: Original strand, 40008245 - 40008715
Alignment:
Q  14 agaagggttcaatgcagataacaaataaaattgtgcatctatattctagtggattttttcttatatagaaaacatattattgcttagtaaaagattcaac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40008245 agaagggttcaatgcagataacaaataaaattgtgcatctatattctagtggattttttcttatatagaaaacatattattgcttagtaaaagattcaac 40008344  T
Q  114 catgagaaactttgacttggatgaaaagaacatttaatatgggaaaaagctattagactcctacagccaactggtaggaatggatacttagccctgatgg 213  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  40008345 aatgagaaactttgacttggatgaaaagaacatttaatatgggaaaaagctattagactcctacagccaactggtaggaatggatacttagccctgattg 40008444  T
Q  214 aataaacaacttaattaagcacttacgctataagcatttatcataagatcttatgtataacctatttctgtaacaaaaggtaaaatataagttataaggt 313  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  40008445 aataaacaacttaattaagcacttgcgctataaccatttatcataagagcttatgtataacctatttctgtaacaaaaggtaaaatgtaagttataagga 40008544  T
Q  314 gttttcataaactatcctgaagagcttataaaaataagtaagattaaaaagcttatagacatgtcatggctatttccgtgagttctctcgagtaggctga 413  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40008545 attttcataaactatcctgaagagcttataaaaataagtaagattaaaaagcttatagacatgtcatggctatttccatgagttctctcgagtaggctga 40008644  T
Q  414 cttgtaattatgtcaatagataagttcaaataagtcaatttcgacaaaaacttacttaatacagttaaaac 484  Q
    || ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40008645 ctagtacttatgtcaacagataagttcaaataagtcaatttcgacaaaaacttacttaatacagttaaaac 40008715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 299 - 350
Target Start/End: Original strand, 56480341 - 56480392
Alignment:
Q  299 tataagttataaggtgttttcataaactatcctgaagagcttataaaaataa 350  Q
    ||||||||||||| ||||||||||||||||| || ||||||||| |||||||    
T  56480341 tataagttataagctgttttcataaactatcttggagagcttatgaaaataa 56480392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 23819081 - 23819134
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    |||||||||||||  ||||||||||| ||||| ||||||||||||| |||||||    
T  23819081 atataagttataacatgttttcataagctatcttgaagagcttatagaaataag 23819134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 36722747 - 36722694
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    |||||||||||||| |||||| ||||  ||||||||||||||||| ||||||||    
T  36722747 atataagttataagttgttttgataagttatcctgaagagcttatgaaaataag 36722694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 2996565 - 2996644
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagcttataaaaataagtaagattaaaaagcttatagacatgtcat 380  Q
    |||||||||||||| ||||||||||| ||||| || ||||| ||| |||||||||  ||  ||||||||||| ||||||||||    
T  2996565 atataagttataagttgttttcataagctatcttggagagcgtatgaaaataagt-tga--aaaaagcttatggacatgtcat 2996644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 352
Target Start/End: Original strand, 3175946 - 3175997
Alignment:
Q  301 taagttataaggtgttttcataaactatcctgaagagcttataaaaataagt 352  Q
    ||||||||||| ||||||||||| ||||||||||| |||| || ||||||||    
T  3175946 taagttataagctgttttcataagctatcctgaagggcttgtagaaataagt 3175997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 6130744 - 6130707
Alignment:
Q  315 ttttcataaactatcctgaagagcttataaaaataagt 352  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  6130744 ttttcataaactatcttgacgagcttataaaaataagt 6130707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 343
Target Start/End: Original strand, 28252222 - 28252267
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagcttata 343  Q
    |||||||| |||||| |||||||||| ||||| |||||||||||||    
T  28252222 atataagtaataaggagttttcataagctatcatgaagagcttata 28252267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 47800623 - 47800668
Alignment:
Q  306 tataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    |||||| ||||||||||| ||||| |||||||||||| ||||||||    
T  47800623 tataagctgttttcataagctatcttgaagagcttatgaaaataag 47800668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 10296372 - 10296457
Alignment:
Q  264 ttatgtataacctatttctgtaacaaaaggtaaaatataagttataaggtgttttcataaactatcctgaagagcttataaaaataagt 352  Q
    |||||| ||| |||||||| ||||||||||||||||||||| ||||||  |||||||||| ||   ||| ||||||||| |||||||||    
T  10296372 ttatgtgtaagctatttctataacaaaaggtaaaatataagctataagtggttttcataagct---ctggagagcttatgaaaataagt 10296457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 17258952 - 17258908
Alignment:
Q  307 ataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||    
T  17258952 ataagctgttttcataaactatcctgaagagcttatgaaaataag 17258908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 340
Target Start/End: Original strand, 14257457 - 14257499
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagctt 340  Q
    |||||||||||||||||||||||||||||||| || |||||||    
T  14257457 atataagttataaggtgttttcataaactatcttggagagctt 14257499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 4855690 - 4855743
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    |||||||||||||| ||||||||||||||||||  ||||||||| | |||||||    
T  4855690 atataagttataagttgttttcataaactatcccaaagagcttacagaaataag 4855743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 452
Target Start/End: Original strand, 17369315 - 17369347
Alignment:
Q  420 attatgtcaatagataagttcaaataagtcaat 452  Q
    ||||||||| |||||||||||||||||||||||    
T  17369315 attatgtcagtagataagttcaaataagtcaat 17369347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 18543274 - 18543230
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagcttat 342  Q
    ||||||| |||||| ||||||||||| |||||||| |||||||||    
T  18543274 atataagatataagttgttttcataagctatcctggagagcttat 18543230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 306 - 349
Target Start/End: Complemental strand, 1350312 - 1350269
Alignment:
Q  306 tataaggtgttttcataaactatcctgaagagcttataaaaata 349  Q
    |||||| |||||||||||||||||||||||||||||| ||||||    
T  1350312 tataagctgttttcataaactatcctgaagagcttatgaaaata 1350269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 350
Target Start/End: Complemental strand, 30456528 - 30456476
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagcttataaaaataa 350  Q
    ||||||||||||||  |||||||||||||||| || ||||||||| |||||||    
T  30456528 atataagttataagtggttttcataaactatcttggagagcttatgaaaataa 30456476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 46104644 - 46104592
Alignment:
Q  299 tataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    |||||| |||||| ||||||||||| |||| ||||||||||||| ||||||||    
T  46104644 tataagctataagttgttttcataagctatgctgaagagcttatgaaaataag 46104592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 342
Target Start/End: Original strand, 36370663 - 36370705
Alignment:
Q  300 ataagttataaggtgttttcataaactatcctgaagagcttat 342  Q
    ||||| |||||| ||||| ||||||||||||||||||||||||    
T  36370663 ataagctataagttgtttccataaactatcctgaagagcttat 36370705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 352
Target Start/End: Original strand, 40439046 - 40439100
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagcttataaaaataagt 352  Q
    ||||| |||||||| ||||||||| | ||||||||||||||||||  ||||||||    
T  40439046 atatatgttataagttgttttcattagctatcctgaagagcttatggaaataagt 40439100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 27378891 - 27378854
Alignment:
Q  313 tgttttcataaactatcctgaagagcttataaaaataa 350  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  27378891 tgttttcataaactatcctggagagcttatgaaaataa 27378854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 31338500 - 31338553
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    |||||||||||||| ||||| |||||||||||||   |||||||| ||||||||    
T  31338500 atataagttataagttgtttccataaactatcctatggagcttatgaaaataag 31338553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 44151558 - 44151505
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    ||||||| |||||| ||||||||||||||||| |||| |||||||  |||||||    
T  44151558 atataagctataagttgttttcataaactatcttgaaaagcttatggaaataag 44151505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 44821952 - 44822005
Alignment:
Q  299 tataagttataaggtgttttcataaactatcctgaagagcttataaaaataagt 352  Q
    ||||||||||||| ||||||||||| |||| ||| ||| ||||| |||||||||    
T  44821952 tataagttataagctgttttcataagctattctggagaacttatgaaaataagt 44822005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 3610817 - 3610765
Alignment:
Q  299 tataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    |||||| |||||| ||||||| |||||||||||  |||||||||| |||||||    
T  3610817 tataagctataagttgttttcgtaaactatcctagagagcttatagaaataag 3610765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 457
Target Start/End: Complemental strand, 25670543 - 25670507
Alignment:
Q  421 ttatgtcaatagataagttcaaataagtcaatttcga 457  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  25670543 ttatgtcaatagataagctcaagtaagtcaatttcga 25670507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 9477945 - 9477998
Alignment:
Q  299 tataagttataaggtgttttcataaactatcctgaagagcttataaaaataagt 352  Q
    ||||||||||||| ||||||||||| |||||||| |||| |||| |||||||||    
T  9477945 tataagttataagttgttttcataagctatcctggagaggttatgaaaataagt 9477998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 350
Target Start/End: Original strand, 15377757 - 15377809
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagcttataaaaataa 350  Q
    |||||||||||||| ||||||||||| |||| |||| |||||||| |||||||    
T  15377757 atataagttataagctgttttcataagctattctgaggagcttatgaaaataa 15377809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 43985080 - 43985028
Alignment:
Q  299 tataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    ||||| ||||||| ||||||||||| ||||| |||||||||||| ||||||||    
T  43985080 tataaattataagttgttttcataagctatcttgaagagcttatgaaaataag 43985028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 351
Target Start/End: Original strand, 4026811 - 4026862
Alignment:
Q  300 ataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    |||| ||||||| |||||||||||| ||||||||||| ||||| ||||||||    
T  4026811 ataaattataagctgttttcataaattatcctgaagaacttatgaaaataag 4026862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 351
Target Start/End: Complemental strand, 10563633 - 10563583
Alignment:
Q  301 taagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    ||||||||||| ||||||||||| |||| ||||||||||||  ||||||||    
T  10563633 taagttataagttgttttcataagctatgctgaagagcttaagaaaataag 10563583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 36863703 - 36863649
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagcttataaaaataagt 352  Q
    |||||||||||||  ||||||||||| ||||| || ||||||||| |||||||||    
T  36863703 atataagttataaattgttttcataagctatcttggagagcttatgaaaataagt 36863649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 44644278 - 44644323
Alignment:
Q  306 tataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    |||||| |||||||| |||||||| |||||||||||| ||||||||    
T  44644278 tataagctgttttcaaaaactatcttgaagagcttatgaaaataag 44644323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 1899934 - 1899986
Alignment:
Q  299 tataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    |||||| |||||  |||||||||||||||| || ||||| |||||||||||||    
T  1899934 tataagctataaaatgttttcataaactattctaaagagtttataaaaataag 1899986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 6988112 - 6988160
Alignment:
Q  303 agttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    ||||||||| ||||||||||| ||||| ||||||| ||||| |||||||    
T  6988112 agttataagttgttttcataagctatcttgaagagtttatagaaataag 6988160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 13864589 - 13864625
Alignment:
Q  264 ttatgtataacctatttctgtaacaaaaggtaaaata 300  Q
    |||||||||| |||||||| |||||||||||||||||    
T  13864589 ttatgtataagctatttctataacaaaaggtaaaata 13864625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 449
Target Start/End: Complemental strand, 23142527 - 23142499
Alignment:
Q  421 ttatgtcaatagataagttcaaataagtc 449  Q
    |||||||||||||||||||||||||||||    
T  23142527 ttatgtcaatagataagttcaaataagtc 23142499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 449
Target Start/End: Complemental strand, 23554317 - 23554289
Alignment:
Q  421 ttatgtcaatagataagttcaaataagtc 449  Q
    |||||||||||||||||||||||||||||    
T  23554317 ttatgtcaatagataagttcaaataagtc 23554289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 350
Target Start/End: Original strand, 39983334 - 39983386
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagcttataaaaataa 350  Q
    ||||||| |||||| ||||||||||| |||||||| |||||| || |||||||    
T  39983334 atataagctataagttgttttcataagctatcctggagagctaatgaaaataa 39983386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 43141863 - 43141907
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagcttat 342  Q
    ||||||| |||||| ||||||||||| ||||||||||||| ||||    
T  43141863 atataagctataagatgttttcataagctatcctgaagagtttat 43141907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 347
Target Start/End: Complemental strand, 25005875 - 25005826
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagcttataaaaa 347  Q
    ||||||| |||||| ||||||||||| |||||||| ||||||||||||||    
T  25005875 atataagctataagttgttttcataagctatcctggagagcttataaaaa 25005826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 27887196 - 27887143
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    ||||||| |||||| ||||||||||||||||| || ||||| ||||||||||||    
T  27887196 atataagctataagttgttttcataaactatcatggagagcatataaaaataag 27887143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 43332477 - 43332529
Alignment:
Q  299 tataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    |||||||| |||| ||||||||||| ||||| |||||||||||| ||||||||    
T  43332477 tataagttgtaagctgttttcataagctatcttgaagagcttattaaaataag 43332529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 351
Target Start/End: Complemental strand, 37842431 - 37842380
Alignment:
Q  300 ataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    ||||| |||||| ||||||||||| ||||| |||||| ||||||||||||||    
T  37842431 ataagctataagttgttttcataagctatcttgaagaacttataaaaataag 37842380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 7218152 - 7218098
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagcttataaaaataagt 352  Q
    ||||||| |||||| ||||||||||| |||||||| ||| ||||| |||||||||    
T  7218152 atataagctataagttgttttcataacctatcctggagaacttatgaaaataagt 7218098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 38651494 - 38651456
Alignment:
Q  313 tgttttcataaactatcctgaagagcttataaaaataag 351  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  38651494 tgttttcataagctatcctggagagcttataaaaataag 38651456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 342
Target Start/End: Original strand, 2778661 - 2778702
Alignment:
Q  301 taagttataaggtgttttcataaactatcctgaagagcttat 342  Q
    ||||||||||| ||| ||||||||||||| ||||||||||||    
T  2778661 taagttataagttgtattcataaactatcttgaagagcttat 2778702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 30257675 - 30257728
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    ||||||| | |||| |||||||||||||||||||| || ||||||| |||||||    
T  30257675 atataagctttaagttgttttcataaactatcctggagggcttatagaaataag 30257728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 337
Target Start/End: Original strand, 44940335 - 44940372
Alignment:
Q  300 ataagttataaggtgttttcataaactatcctgaagag 337  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  44940335 ataagttataagttgttttcataatctatcctgaagag 44940372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 4700143 - 4700091
Alignment:
Q  299 tataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    |||||| |||||  |||||| ||||||||||||| ||||||||| ||||||||    
T  4700143 tataagctataaactgtttttataaactatcctggagagcttatgaaaataag 4700091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 34290229 - 34290281
Alignment:
Q  299 tataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    |||||| |||||| ||||||||||| ||||| |||||| ||||| ||||||||    
T  34290229 tataagctataagctgttttcataagctatcttgaagaacttatgaaaataag 34290281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 342
Target Start/End: Original strand, 50319230 - 50319306
Alignment:
Q  263 cttatgtataacctatttctgtaacaaaaggtaaaatataagttataaggtgttttcataaactatcctgaagagcttat 342  Q
    ||||||||||| |||||||| ||||||||| ||||||| ||||   ||| ||||||||||| |||||||  |||||||||    
T  50319230 cttatgtataagctatttctataacaaaagataaaata-aagt--caagttgttttcataagctatcctagagagcttat 50319306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 452
Target Start/End: Complemental strand, 10560012 - 10559981
Alignment:
Q  421 ttatgtcaatagataagttcaaataagtcaat 452  Q
    ||||||||||||||||||||||||||||||||    
T  10560012 ttatgtcaatagataagttcaaataagtcaat 10559981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 258
Target Start/End: Original strand, 8062208 - 8062246
Alignment:
Q  220 caacttaattaagcacttacgctataagcatttatcata 258  Q
    |||||||||||||||||||| |||||||| |||||||||    
T  8062208 caacttaattaagcacttacactataagcgtttatcata 8062246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 39551279 - 39551233
Alignment:
Q  306 tataaggtgttttcataaactatcctgaagagcttataaaaataagt 352  Q
    |||||| ||||||||||| || ||||| |||||||||||||||||||    
T  39551279 tataagttgttttcataagctttcctggagagcttataaaaataagt 39551233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 6509381 - 6509328
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    ||||||| |||||| ||||||||||| |||||||| |||||||||  |||||||    
T  6509381 atataagctataagctgttttcataagctatcctggagagcttattgaaataag 6509328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 10075629 - 10075576
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    |||||||||||||| | ||||||||| |||||||  ||||||||| ||||||||    
T  10075629 atataagttataagctattttcataagctatcctagagagcttatgaaaataag 10075576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 9956891 - 9956839
Alignment:
Q  299 tataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    ||||||||||||| ||||||||||| ||||| || ||| ||||| ||||||||    
T  9956891 tataagttataagttgttttcataatctatcttggagaacttatgaaaataag 9956839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 452
Target Start/End: Complemental strand, 2081040 - 2081009
Alignment:
Q  421 ttatgtcaatagataagttcaaataagtcaat 452  Q
    ||||||||||||||||||||||||||||||||    
T  2081040 ttatgtcaatagataagttcaaataagtcaat 2081009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 24158581 - 24158527
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagcttataaaaataagt 352  Q
    |||||||| ||||| ||||||||||| |||||||| |||||||||  ||||||||    
T  24158581 atataagtaataagctgttttcataagctatcctggagagcttatggaaataagt 24158527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 351
Target Start/End: Original strand, 40665424 - 40665474
Alignment:
Q  301 taagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    ||||||||||| |||||||||||  |||| || ||||||||||||||||||    
T  40665424 taagttataagatgttttcataagttatcttggagagcttataaaaataag 40665474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 20502138 - 20502093
Alignment:
Q  306 tataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    |||||| ||||||||||| |||||||||||||||||| | ||||||    
T  20502138 tataagctgttttcataagctatcctgaagagcttatgagaataag 20502093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 52618995 - 52619048
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    |||||||||||||| |||||||| || ||||| |||||||||| | ||||||||    
T  52618995 atataagttataagctgttttcacaagctatcttgaagagcttgtgaaaataag 52619048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 1816576 - 1816628
Alignment:
Q  299 tataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    |||||| |||||| ||||||||||| |||| ||| ||||||||| ||||||||    
T  1816576 tataagatataagttgttttcataagctatactggagagcttatcaaaataag 1816628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 34382935 - 34382987
Alignment:
Q  299 tataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    ||||||||||||| | ||||||||| |||||||||| ||||||  ||||||||    
T  34382935 tataagttataagttcttttcataagctatcctgaaaagcttaagaaaataag 34382987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 36887463 - 36887549
Alignment:
Q  266 atgtataacctatttctgtaacaaaaggtaaaatataagttata--aggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    ||||||||  ||||||| ||||||||| |||||| |||||||||  || ||||||||||| | ||| |||||| ||||| ||||||||    
T  36887463 atgtataagttatttctataacaaaagataaaat-taagttatataagttgttttcataagccatcttgaagaacttatgaaaataag 36887549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 160051 - 160009
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagctt 340  Q
    |||||||||||||| ||||||||||| ||||||| ||||||||    
T  160051 atataagttataagatgttttcataagctatcctaaagagctt 160009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 25100039 - 25100089
Alignment:
Q  302 aagttataaggtgttttcataaactatcctgaagagcttataaaaataagt 352  Q
    |||||||||| ||||||||||| ||||| | ||||||||||| ||||||||    
T  25100039 aagttataagttgttttcataagctatcttaaagagcttatagaaataagt 25100089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 1497973 - 1498026
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    |||| |||||||||  |||||||||||||||| || ||||||||| ||||||||    
T  1497973 atatgagttataagaagttttcataaactatcttggagagcttatgaaaataag 1498026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 29837145 - 29837112
Alignment:
Q  315 ttttcataaactatcctgaagagcttataaaaat 348  Q
    |||||||||||||||||||||||||||| |||||    
T  29837145 ttttcataaactatcctgaagagcttatgaaaat 29837112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 33911360 - 33911307
Alignment:
Q  298 atataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    |||||| ||||||| |||||||||||||||||||||| || || | ||||||||    
T  33911360 atataatttataagctgttttcataaactatcctgaaaagtttgtgaaaataag 33911307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 453
Target Start/End: Original strand, 13908353 - 13908385
Alignment:
Q  421 ttatgtcaatagataagttcaaataagtcaatt 453  Q
    |||||||| ||||||||||||||||||||||||    
T  13908353 ttatgtcagtagataagttcaaataagtcaatt 13908385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 26694871 - 26694923
Alignment:
Q  299 tataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    |||| |||||||  ||||||||||||||||| |||||| ||||| ||||||||    
T  26694871 tatatgttataaattgttttcataaactatcttgaagaacttatgaaaataag 26694923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 31812090 - 31812038
Alignment:
Q  299 tataagttataaggtgttttcataaactatcctgaagagcttataaaaataag 351  Q
    |||||| |||||| ||||||||||| ||||| || ||||||||| ||||||||    
T  31812090 tataagatataagttgttttcataagctatcttggagagcttatgaaaataag 31812038  T

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