View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2295_low_40 (Length: 209)
Name: NF2295_low_40
Description: NF2295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2295_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 47285428 - 47285603
Alignment:
| Q |
17 |
tagaggagaatcaaaggcgctcatattttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgtt |
116 |
Q |
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|||||||| | || ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||| |
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| T |
47285428 |
tagaggaggagcacaggcgcttatattttgagtatcataactgaaagaaggagcatgcgactgatcaataaaagcaatgacagaaacaagagtagttgtt |
47285527 |
T |
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| Q |
117 |
ccatcatcgagcttttgaatctggagatctggtctctttcggatcctagacatgtatctcttttttctctcttctt |
192 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47285528 |
ccatcatcgagcttttgaatctggagatatggtctctttcggatcctagacatgtatctcttttttctctcttctt |
47285603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 36 - 192
Target Start/End: Original strand, 47307007 - 47307160
Alignment:
| Q |
36 |
ctcatattttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagctttt-ga |
134 |
Q |
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|||||||| ||| ||| |||||| | |||| |||||||||||| |||| |||||||||| ||||||| ||||||||||||||||| |||||||| || |
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| T |
47307007 |
ctcatattatgattattataacttacagaaacagcatgtgactggtcaacagaagcaatg---ggaacaaaagtagttgttccatcattgagcttttgga |
47307103 |
T |
|
| Q |
135 |
atctggagatctggtctctttcggatcctagacatgtatctcttttttctctcttctt |
192 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47307104 |
atc-ggagatctggtctctttcggatcctagacatgtatctcttttttttctcttctt |
47307160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 36 - 191
Target Start/End: Original strand, 2589494 - 2589649
Alignment:
| Q |
36 |
ctcatattttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaa |
135 |
Q |
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|||||||||||| |||||||| ||| ||| |||||| || ||||||| |||||||| || ||||||| ||||||||||||||||| ||||||||||| |
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| T |
2589494 |
ctcatattttgattatcataattgaccaaagtagcatgagattgatcaacagaagcaacaactggaacaaaagtagttgttccatcattgagcttttgaa |
2589593 |
T |
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| Q |
136 |
tctggagatctggtctctttcggatcctagacatgtatctcttttttctctcttct |
191 |
Q |
| |
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|| |||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2589594 |
tccggagatttggtctctttcggatcttagacatgtatctcttttttctctcttct |
2589649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 36 - 181
Target Start/End: Complemental strand, 2589978 - 2589833
Alignment:
| Q |
36 |
ctcatattttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaa |
135 |
Q |
| |
|
|||||||||||| |||||||| ||| ||||| |||||| |||||||||| |||| ||| || |||||| ||| ||||||||| ||| ||| ||||||| |
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| T |
2589978 |
ctcatattttgattatcataattgacagaagcagcatgcgactgatcaacagaaacaacaactcgaacaaaagttgttgttccaacattgagtttttgaa |
2589879 |
T |
|
| Q |
136 |
tctggagatctggtctctttcggatcctagacatgtatctcttttt |
181 |
Q |
| |
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| || |||| |||||||||| ||||||||||||||||||||||||| |
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| T |
2589878 |
tatgaagatttggtctctttgggatcctagacatgtatctcttttt |
2589833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 36 - 191
Target Start/End: Original strand, 10299555 - 10299710
Alignment:
| Q |
36 |
ctcatattttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaa |
135 |
Q |
| |
|
|||||||||||| |||||||| ||| ||| |||||| || ||||||| ||||| || || ||||||| ||||||||||| ||||| ||||||||||| |
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| T |
10299555 |
ctcatattttgattatcataattgatcaaagtagcatgagaatgatcaacagaag-aacaaccggaacaaaagtagttgttctatcattgagcttttgaa |
10299653 |
T |
|
| Q |
136 |
tctggagatctggtctctttcggatcctagacatgtatctc-ttttttctctcttct |
191 |
Q |
| |
|
||||||||| |||||||||| |||| |||||||||||||| ||||||||||||||| |
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|
| T |
10299654 |
tctggagatttggtctcttttagatcatagacatgtatctctttttttctctcttct |
10299710 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 36 - 184
Target Start/End: Complemental strand, 10300039 - 10299891
Alignment:
| Q |
36 |
ctcatattttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaa |
135 |
Q |
| |
|
|||||||||||| |||||||| ||| ||||| |||||| ||||||||||||||| ||| || |||||| ||| ||||||||| ||| ||| ||| ||| |
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| T |
10300039 |
ctcatattttgattatcataattgacagaagcagcatgcgactgatcaatagaaacaacaacttgaacaaaagttgttgttccaacattgagttttggaa |
10299940 |
T |
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| Q |
136 |
tctggagatctggtctctttcggatcctagacatgtatctcttttttct |
184 |
Q |
| |
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|||| |||| | ||||||| |||||||||||||||||||||||||||| |
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| T |
10299939 |
tctgaagattttatctctttgggatcctagacatgtatctcttttttct |
10299891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 9e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 37 - 191
Target Start/End: Original strand, 22222226 - 22222382
Alignment:
| Q |
37 |
tcatattttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaat |
136 |
Q |
| |
|
||||||||||| |||||||| ||| | ||| |||||| || || ||||||||||||| || |||||| ||||||||||||||||| || ||| ||||| |
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| T |
22222226 |
tcatattttgattatcataattgacaaaagcagcatgagattggtcaatagaagcaacaactcgaacaaaagtagttgttccatcattgatcttatgaat |
22222325 |
T |
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| Q |
137 |
ctggagatctggt--ctctttcggatcctagacatgtatctcttttttctctcttct |
191 |
Q |
| |
|
| |||||| |||| ||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
22222326 |
ccggagatttggtcactctttcggatcctagacatgtatctcttttttttctcttct |
22222382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 36 - 192
Target Start/End: Complemental strand, 22222712 - 22222556
Alignment:
| Q |
36 |
ctcatattttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaa |
135 |
Q |
| |
|
|||||||||||| |||||||| ||| ||||| |||||| ||||||||| ||| ||| || | ||||| || ||||||||| ||| ||| ||||||| |
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|
| T |
22222712 |
ctcatattttgattatcataattgatagaagcagcatgcaactgatcaacggaaacaacaactgaaacaaatgttgttgttccaacattgagtttttgaa |
22222613 |
T |
|
| Q |
136 |
tctggagatctggtctctttcggatcctagacatgtatctcttttttctctcttctt |
192 |
Q |
| |
|
|||| |||| || ||||||| |||||||||||||||||||||||||||| ||||||| |
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|
| T |
22222612 |
tctgcagatttgttctctttgggatcctagacatgtatctcttttttctttcttctt |
22222556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 68 - 192
Target Start/End: Complemental strand, 38261211 - 38261087
Alignment:
| Q |
68 |
agcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatctggagatctggtctctttcggatcctagac |
167 |
Q |
| |
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||||||||||| |||| | ||||||| |||||||||| ||||||||||||||||| ||||||||||||||| ||| || |||||||| |||||||| |
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| T |
38261211 |
agcatgtgacttatcaccacaagcaataacaggaacaaaagtagttgttccatcattgagcttttgaatctgaagacgcggcctctttcgaatcctagaa |
38261112 |
T |
|
| Q |
168 |
atgtatctcttttttctctcttctt |
192 |
Q |
| |
|
||||||||||||||||| ||||||| |
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|
| T |
38261111 |
atgtatctcttttttctgtcttctt |
38261087 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 68 - 192
Target Start/End: Complemental strand, 38244911 - 38244787
Alignment:
| Q |
68 |
agcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatctggagatctggtctctttcggatcctagac |
167 |
Q |
| |
|
||||||||||| |||| | |||||| |||||||||| ||||||| ||||||||| ||||||||||||||| ||| ||||||||||| |||||||| |
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|
| T |
38244911 |
agcatgtgacttatcagcacaagcaacaacaggaacaaaagtagttcttccatcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaa |
38244812 |
T |
|
| Q |
168 |
atgtatctcttttttctctcttctt |
192 |
Q |
| |
|
|||||||||||||||| ||||||| |
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|
| T |
38244811 |
ttgtatctcttttttctgtcttctt |
38244787 |
T |
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