View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2295_low_5 (Length: 488)
Name: NF2295_low_5
Description: NF2295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2295_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 6 - 393
Target Start/End: Complemental strand, 56442128 - 56441743
Alignment:
| Q |
6 |
agtatcataggaccaaccgcaactatactaattttgatgacttcttgatggacttgaagcataataaacggaaaaagatacgtcaagagcgcaagaaggt |
105 |
Q |
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| T |
56442128 |
agtatcactggaccaaccgcaactatactaattttgacgacttcttgatggacttgaagcataataaacggaaaaagatacgtcaagagcgcaagaaggt |
56442029 |
T |
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| Q |
106 |
tgctgctcagaacttgattatgaaacgcctccgcggttatgaaataaaggtatttttcatcttgtctatactgaattaagattaactgtcacaaattcat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
56442028 |
tgctgctcagaacttgattatgaaacgcctccgcggttatgaaataaaggtattttgcatcatgtctatactgaattaagattaactgtcacaaattcat |
56441929 |
T |
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| Q |
206 |
atttgactgtataaattcnnnnnnnnnnnngttgtgttacatattagtaaacttgtgttgaacaaatagaagccaatttatcatatcttatatagtagga |
305 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
56441928 |
atttgactgtataaattc--ttctttttttgttgtgttacatattagtaaacttgtgttgaacaaatggaagccaatttatcatgtcttatatagtagga |
56441831 |
T |
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| Q |
306 |
gggatatatcagaattgtgcttcttcatagttctatgtttgtcggtgttggctacaagaacaaaaatttacacggggttggatatatc |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56441830 |
gggatatatcagaattgtgcttcttcatagttctatgtttgtcggtgttggctacaagaacaaaaatttacacggggttggatatatc |
56441743 |
T |
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