View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2295_low_7 (Length: 447)
Name: NF2295_low_7
Description: NF2295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2295_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 38729528 - 38729897
Alignment:
| Q |
1 |
ccatcaaaacatcactagctgtcacagccacagaatatcccatggtcttcatttca-gtagaactttggcagcaacatccacaagcttcttattagccag |
99 |
Q |
| |
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| T |
38729528 |
ccatcaaaacatcactagctgtcacatccacagaatatcccattgtcttcatttcaagtagaactttggcagcaacatccaccagcttcttattagcaag |
38729627 |
T |
|
| Q |
100 |
tagagataaaagaacagtgtaagtgcttaggcctggccttaaacctgcattagtcattgaattgtacagtttgatggcatgatcaatttgtccagacgca |
199 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||| |
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| T |
38729628 |
tagagataaaagaacagtataagtgctcaggcctggccttaaacctgcattagtcattgaattgtacagtttcatagcatgatcgatttgtccagacgca |
38729727 |
T |
|
| Q |
200 |
gcatgcatttccaagagacaagcatacgtagatggagttggtagaaatccagctttctccatatatatctgaaaatgcagacatatcaatatcaagcttc |
299 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
38729728 |
gcatgcatttccaagagacaagcatatgtagatggagttggtagaaatccagctttctcc----atatctgaaaatgcagacatagcaatatcaagcttc |
38729823 |
T |
|
| Q |
300 |
cctgattttgcatgtgactcaatgatcaatgtaaacaagccaaagtttggtctgaaccctgcgaatttcatctc |
373 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
38729824 |
cctgattttgcatgtgactcaatgatcaatgtatacaagccaaagtttggtctgaaccctgctaatttcatctc |
38729897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 386014 - 385674
Alignment:
| Q |
1 |
ccatcaaaacatcactagctgtcacagccacagaatatcccatggtcttcatttca-gtagaactttggcagcaacatccacaagcttcttattagccag |
99 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
386014 |
ccatcaaaacatcactagctgtcacatccacagaatatcccatcgtcttcatttcaagtagaactttggcagcaacatccacaagcttcttattagccag |
385915 |
T |
|
| Q |
100 |
tagagataaaagaacagtgtaagtgcttaggcctggccttaaacctgcattagtcattgaattgtacagtttgatggcatgatcaatttgtccagacgca |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || | | |
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|
| T |
385914 |
tagagataaaagaacagtgtaagtgcttaggcctggccttaaacctgcattagtcattgaattgtacagtttcatggcatgatcaatttgtccggatgaa |
385815 |
T |
|
| Q |
200 |
gcatgcatttccaagagacaagcatacgtagatggagttggtagaaatccagctttctccatatatatctgaaaatgcagacatatcaatatcaagcttc |
299 |
Q |
| |
|
|||||||||||||| |||||||| || |||||| ||||| |||||||||||||||||||| || |||||||||||||||||| |||||||||||||| |
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| T |
385814 |
gcatgcatttccaatagacaagcgtatgtagatagagttagtagaaatccagctttctcc----atgtctgaaaatgcagacatagcaatatcaagcttc |
385719 |
T |
|
| Q |
300 |
cctgattttgcatgtgactcaatgatcaatgtaaacaagccaaag |
344 |
Q |
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|||||||||||||| ||||| |||||||||||| ||||||||||| |
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|
| T |
385718 |
cctgattttgcatgagactcgatgatcaatgtatacaagccaaag |
385674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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