View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2295_low_8 (Length: 421)
Name: NF2295_low_8
Description: NF2295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2295_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 172 - 322
Target Start/End: Complemental strand, 3895418 - 3895268
Alignment:
| Q |
172 |
cctctgtcgccgacccagcaacctcccccgtcttctctgccgttttctcagctccttcttttgtcttatcagccatgtaactcgctccttccttggttct |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3895418 |
cctctgtcgccgacccagcaacctcccccgtcttctccgccgttttctcagctccttcttttgtcttatcagccatgtaactcgctccttccttggttct |
3895319 |
T |
|
| Q |
272 |
ttcctttgcatcataagcataatctctagctttctccccagcactctctgc |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3895318 |
ttcctttgcatcataagcataatctctagctttctccccagcactctctgc |
3895268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 261 - 319
Target Start/End: Complemental strand, 3895197 - 3895139
Alignment:
| Q |
261 |
tccttggttctttcctttgcatcataagcataatctctagctttctccccagcactctc |
319 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||| |||| |
|
|
| T |
3895197 |
tcctttgttctctcctttgcatcataagcataatctctagccttctctccagcattctc |
3895139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 3895079 - 3895016
Alignment:
| Q |
259 |
cttccttggttctttcctttgcatcataagcataatctctagctttctccccagcactctctgc |
322 |
Q |
| |
|
|||| |||||||| || ||| | ||||||||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
3895079 |
cttcattggttctgtcttttacctcataagcatagtctctagctttctctccagcattctctgc |
3895016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University