View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2295_low_9 (Length: 412)

Name: NF2295_low_9
Description: NF2295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2295_low_9
NF2295_low_9
[»] chr3 (4 HSPs)
chr3 (127-412)||(28690025-28690310)
chr3 (134-399)||(51925874-51926139)
chr3 (330-391)||(45163166-45163226)
chr3 (39-102)||(51925784-51925850)
[»] chr8 (5 HSPs)
chr8 (142-412)||(26129925-26130196)
chr8 (169-212)||(21123161-21123204)
chr8 (39-102)||(26130227-26130296)
chr8 (166-199)||(10261100-10261133)
chr8 (161-205)||(27286922-27286966)
[»] chr1 (6 HSPs)
chr1 (127-403)||(24886443-24886716)
chr1 (45-108)||(24886726-24886792)
chr1 (161-212)||(25078542-25078593)
chr1 (161-212)||(32839224-32839275)
chr1 (161-199)||(40583037-40583075)
chr1 (348-405)||(50590185-50590242)
[»] chr2 (11 HSPs)
chr2 (133-403)||(20262744-20263013)
chr2 (132-286)||(28772055-28772209)
chr2 (327-412)||(2062056-2062140)
chr2 (288-369)||(28775085-28775166)
chr2 (161-205)||(26062899-26062943)
chr2 (161-205)||(26068638-26068682)
chr2 (158-205)||(32184062-32184109)
chr2 (45-108)||(20262662-20262728)
chr2 (348-397)||(27738981-27739030)
chr2 (158-186)||(31615634-31615662)
chr2 (169-205)||(36658755-36658791)
[»] chr4 (8 HSPs)
chr4 (152-280)||(26070681-26070809)
chr4 (161-265)||(8069544-8069644)
chr4 (133-286)||(6020399-6020553)
chr4 (161-228)||(42912430-42912497)
chr4 (161-199)||(51702161-51702199)
chr4 (56-108)||(48804206-48804261)
chr4 (142-190)||(48804131-48804179)
chr4 (45-100)||(26070855-26070913)
[»] chr7 (5 HSPs)
chr7 (186-270)||(26287344-26287429)
chr7 (161-209)||(12385862-12385910)
chr7 (358-397)||(2569350-2569389)
chr7 (133-185)||(26286052-26286104)
chr7 (161-209)||(34935384-34935432)
[»] chr5 (4 HSPs)
chr5 (161-212)||(15195960-15196011)
chr5 (161-213)||(12658521-12658573)
chr5 (161-205)||(17197721-17197765)
chr5 (161-205)||(17773648-17773692)
[»] scaffold0527 (2 HSPs)
scaffold0527 (166-205)||(3095-3134)
scaffold0527 (166-205)||(11158-11197)
[»] chr6 (1 HSPs)
chr6 (161-248)||(9513164-9513252)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 127 - 412
Target Start/End: Complemental strand, 28690310 - 28690025
Alignment:
Q  127 cgcatcgtgaatgtgtagagtatcgaggtatgcatatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaaaaacttcagcaagc 226  Q
    |||| ||||||||| || |||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||    
T  28690310 cgcagcgtgaatgtttatagtatcgaggtaagcgtatgaatcgcctgccaacacataaacgatccaaggtccaacaacttcctaaaaaaattcaacaagc 28690211  T
Q  227 caaagcgccctttcgggccaaatcaatccaatcgaagtcgagatcaatgaacaagcgacgaacacagtccaccaacacaacaaccaatgacgaatgaaac 326  Q
    ||||||||| ||||| |||||||||||||||||||| || |||||||||||||||||||  |||||||||||||||   |||||| |||||  |||||||    
T  28690210 caaagcgccttttcgagccaaatcaatccaatcgaattccagatcaatgaacaagcgacagacacagtccaccaacggcacaaccgatgacagatgaaac 28690111  T
Q  327 aattctgaaggtacgattaacgactacaaccgccaatacggagcgactacgcaccaaactctttcgagcaatatctgacaaatcaa 412  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||    
T  28690110 aattctgaaggtacgattaacgactactaccgccaatacggagcgactacgcaccaaactcttttgagcaatatctgtcgaatcaa 28690025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 134 - 399
Target Start/End: Original strand, 51925874 - 51926139
Alignment:
Q  134 tgaatgtgtagagtatcgaggtatgcatatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaaaaacttcagcaagccaaagcg 233  Q
    ||||||| ||||||||| ||||| || ||||||||||||||||||||| |||||| ||||||||||||| || |||||||||||||||||||||||||||    
T  51925874 tgaatgtttagagtatcaaggtaggcgtatgaatcgtctgccaacacataaacgacccaaggtccaacagctccctaaaaaacttcagcaagccaaagcg 51925973  T
Q  234 ccctttcgggccaaatcaatccaatcgaagtcgagatcaatgaacaagcgacgaacacagtccaccaacacaacaaccaatgacgaatgaaacaattctg 333  Q
    |||||||||||||||||||||||||||||||  |||||||||| ||||| ||| |||| |||||||||||  |||||  |||||| |||||||  ||||     
T  51925974 ccctttcgggccaaatcaatccaatcgaagttcagatcaatgagcaagcaacggacactgtccaccaacagcacaactgatgacggatgaaacggttcta 51926073  T
Q  334 aaggtacgattaacgactacaaccgccaatacggagcgactacgcaccaaactctttcgagcaata 399  Q
     ||||||| ||||||||||| |||| ||| |||||||||| ||||||| |||||||||||||||||    
T  51926074 taggtacggttaacgactactaccgtcaacacggagcgacgacgcacctaactctttcgagcaata 51926139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 391
Target Start/End: Complemental strand, 45163226 - 45163166
Alignment:
Q  330 tctgaaggtacgattaacgactacaaccgccaatacggagcgactacgcaccaaactctttc 391  Q
    ||||||||||| || || |||||| |||||||| |||||||| ||| |||||||||||||||    
T  45163226 tctgaaggtac-atgaatgactactaccgccaacacggagcgtctaagcaccaaactctttc 45163166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 51925784 - 51925850
Alignment:
Q  39 taaataaaaacaactcaaaacaacattactacgg---gcccagcgaacccacgtgtggatacgaaac 102  Q
    |||||||||||| || ||||||||| |||||| |   ||||| ||||||||| ||||||||||||||    
T  51925784 taaataaaaacagcttaaaacaacactactacagccagcccaacgaacccacatgtggatacgaaac 51925850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 6e-53; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 142 - 412
Target Start/End: Complemental strand, 26130196 - 26129925
Alignment:
Q  142 tagagtatcgaggtatgcatatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaaaaacttcagcaagccaaagcgccctttcg 241  Q
    ||||||||| ||||| || ||||||||||||||||| ||||||||||| |||| ||||||| || |||||||||| ||||||||||||||||||||||||    
T  26130196 tagagtatctaggtaggcgtatgaatcgtctgccaaaacagaaacgattcaagatccaacagctccctaaaaaacatcagcaagccaaagcgccctttcg 26130097  T
Q  242 ggccaaatcaatccaatcgaagtcgagatcaatgaacaagcgac-gaacacagtccaccaac-aca-acaaccaatgacgaatgaaacaattctgaaggt 338  Q
    |||||||||||||| |||| | || | ||||||||||||||||| |||| ||||||| | ||  || ||||||   |||| || || || || |||||||    
T  26130096 ggccaaatcaatcctatcggaatccatatcaatgaacaagcgacggaactcagtccatctacggcatacaacc-gcgacggattaaccagttatgaaggt 26129998  T
Q  339 acgattaacgactacaaccgccaatacggagcgactacgcaccaaactctttcgagcaatatctgacaaatcaa 412  Q
    ||| |||| | |||| |||||||| ||||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  26129997 acg-ttaatgtctaccaccgccaacacggagcgactacgcaccaaactctctcgagcaacatctgacgaatcaa 26129925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 21123204 - 21123161
Alignment:
Q  169 gtctgccaacacagaaacgatccaaggtccaacaacttcctaaa 212  Q
    ||||||||||||||||||||| |||| |||||||||| ||||||    
T  21123204 gtctgccaacacagaaacgattcaagttccaacaactccctaaa 21123161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 26130296 - 26130227
Alignment:
Q  39 taaataaaaacaactcaaaacaacattactacgg------gcccagcgaacccacgtgtggatacgaaac 102  Q
    ||||| |||||||||| |||||||| |||||| |      ||||||||||||||||||||||||||||||    
T  26130296 taaatgaaaacaactctaaacaacagtactactgcagacagcccagcgaacccacgtgtggatacgaaac 26130227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 10261100 - 10261133
Alignment:
Q  166 atcgtctgccaacacagaaacgatccaaggtcca 199  Q
    ||||||||||||||||||||||||||||| ||||    
T  10261100 atcgtctgccaacacagaaacgatccaagttcca 10261133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 27286966 - 27286922
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaact 205  Q
    |||||||||||||||||||||||||| || |||| |||| |||||    
T  27286966 tatgaatcgtctgccaacacagaaacaattcaagatccatcaact 27286922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 127 - 403
Target Start/End: Complemental strand, 24886716 - 24886443
Alignment:
Q  127 cgcatcgtgaatgtgtagagtatcgaggtatgcatatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaaaaacttcagcaagc 226  Q
    ||||| ||||| || ||||||||  ||||| | ||||||||||||| |||||||||||||||| |||||||||||| | |||  |||||| |||||||||    
T  24886716 cgcatagtgaaagtttagagtattaaggtaggaatatgaatcgtctaccaacacagaaacgattcaaggtccaacagc-tccataaaaacatcagcaagc 24886618  T
Q  227 caaagcgccctttcgggccaaatcaatccaatcgaagtcgagatcaatgaacaagcgac-gaacacagtccaccaacacaacaaccaatgacgaatgaaa 325  Q
    |||||||||||||||| ||||  || ||||||||||||| | || ||||||||  || | ||||||| |||||| ||   ||||||  ||||| ||   |    
T  24886617 caaagcgccctttcggaccaa--cagtccaatcgaagtccatataaatgaacatacgtcggaacacaatccacctacggcacaacc-gtgacggatatta 24886521  T
Q  326 caattctgaaggtacgattaacgactacaaccgccaatacggagcgactacgcaccaaactctttcgagcaatatctg 403  Q
    || |||||||||||||||| | |||||| |||||||| |||||||||||||||||||||||||||||||||| |||||    
T  24886520 cagttctgaaggtacgattgaagactactaccgccaacacggagcgactacgcaccaaactctttcgagcaacatctg 24886443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 24886792 - 24886726
Alignment:
Q  45 aaaacaactcaaaacaacattactacgg---gcccagcgaacccacgtgtggatacgaaactgaact 108  Q
    |||||||||| |||||||| |||||| |   ||||||||||||||||| |||||||||||| |||||    
T  24886792 aaaacaactctaaacaacactactacagacagcccagcgaacccacgtatggatacgaaaccgaact 24886726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 25078542 - 25078593
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaa 212  Q
    ||||||||||||||||||| |||||| || |||| |||||||||| ||||||    
T  25078542 tatgaatcgtctgccaacagagaaacaattcaagttccaacaactccctaaa 25078593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 32839224 - 32839275
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaa 212  Q
    |||||||| ||| || |||||||||||||||||| |||||||||| ||||||    
T  32839224 tatgaatcatctacctacacagaaacgatccaagttccaacaactccctaaa 32839275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 40583037 - 40583075
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtcca 199  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  40583037 tatgaatcgtctgccaacatagaaacgatccaagttcca 40583075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 405
Target Start/End: Original strand, 50590185 - 50590242
Alignment:
Q  348 gactacaaccgccaatacggagcgactacgcaccaaactctttcgagcaatatctgac 405  Q
    |||||| |||||||| |||||||  ||| ||||||||| ||||||||||| |||||||    
T  50590185 gactactaccgccaacacggagcatctatgcaccaaaccctttcgagcaacatctgac 50590242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 4e-45; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 133 - 403
Target Start/End: Original strand, 20262744 - 20263013
Alignment:
Q  133 gtgaatgtgtagagtatcgaggtatgcatatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaaaaacttcagcaagccaaagc 232  Q
    ||||| || ||||||||  ||||| || ||||||||||||||||||||||||||||| |||||||||||| || ||| ||||||  ||||||||||||||    
T  20262744 gtgaaagtttagagtattaaggtaggcgtatgaatcgtctgccaacacagaaacgattcaaggtccaacagctccct-aaaaacagcagcaagccaaagc 20262842  T
Q  233 gccctttcgggccaaatcaatccaatcgaagtcgagatcaat-gaacaagcgac-gaacacagtccaccaacacaacaaccaatgacgaatgaaacaatt 330  Q
    ||||||||| ||| || |||||||||||||||| |||| |||  ||||  || | ||||||| |||||| ||   ||||||  |||| ||| | ||| ||    
T  20262843 gccctttcgagcccaa-caatccaatcgaagtccagataaataaaacatacgtcggaacacaatccacctacggcacaacc-gtgacaaataatacagtt 20262940  T
Q  331 ctgaaggtacgattaacgactacaaccgccaatacggagcgactacgcaccaaactctttcgagcaatatctg 403  Q
    || ||||||||||| | |||||| |||||||| |||||||||||||||||||||||||||||||||| |||||    
T  20262941 ctaaaggtacgattgaagactactaccgccaacacggagcgactacgcaccaaactctttcgagcaacatctg 20263013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 132 - 286
Target Start/End: Original strand, 28772055 - 28772209
Alignment:
Q  132 cgtgaatgtgtagagtatcgaggtatgcatatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaaaaacttcagcaagccaaag 231  Q
    ||||||||| ||||||||| ||||| |  |||||||||| ||||| ||||||||  ||||||||||||||| || ||||||| | ||||||||| |||||    
T  28772055 cgtgaatgtttagagtatcaaggtaggtgtatgaatcgtttgccagcacagaaatcatccaaggtccaacagctccctaaaacatttcagcaagtcaaag 28772154  T
Q  232 cgccctttcgggccaaatcaatccaatcgaagtcgagatcaatgaacaagcgacg 286  Q
    ||||||||||||||||||||||||||| |||||  ||||||||||| || |||||    
T  28772155 cgccctttcgggccaaatcaatccaattgaagttcagatcaatgaaaaaacgacg 28772209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 412
Target Start/End: Complemental strand, 2062140 - 2062056
Alignment:
Q  327 aattctgaaggtacgattaacgactacaaccgccaatacggagcgactacgcaccaaactctttcgagcaatatctgacaaatcaa 412  Q
    |||||||||||||| || || |||||| |||||||| |||||||| ||| ||||| ||||||||||||||| ||||||||| ||||    
T  2062140 aattctgaaggtac-ataaatgactactaccgccaacacggagcgtctaagcacccaactctttcgagcaacatctgacaactcaa 2062056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 369
Target Start/End: Original strand, 28775085 - 28775166
Alignment:
Q  288 acacagtccaccaacacaacaaccaatgacgaatgaaacaattctgaaggtacgattaacgactacaaccgccaatacggag 369  Q
    |||||||||||||||   |||||| || ||  |||||||| |||||||||||||||||| |||||| |||||||| ||||||    
T  28775085 acacagtccaccaacggcacaaccgataactgatgaaacagttctgaaggtacgattaatgactactaccgccaacacggag 28775166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 26062899 - 26062943
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaact 205  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||    
T  26062899 tatgaatcgtctgccaacacataaacgatccaagttccaacaact 26062943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 26068638 - 26068682
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaact 205  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||    
T  26068638 tatgaatcgtctgccaacacataaacgatccaagttccaacaact 26068682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 32184062 - 32184109
Alignment:
Q  158 gcatatgaatcgtctgccaacacagaaacgatccaaggtccaacaact 205  Q
    ||||||||||| |||| ||||||||||||||||||||||||| |||||    
T  32184062 gcatatgaatcatctgtcaacacagaaacgatccaaggtccagcaact 32184109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 20262662 - 20262728
Alignment:
Q  45 aaaacaactcaaaacaacattactacgggc---ccagcgaacccacgtgtggatacgaaactgaact 108  Q
    |||||||||| |||||||| |||||||| |   ||||||||||||||| ||||||||||| ||||||    
T  20262662 aaaacaactctaaacaacaatactacggacaacccagcgaacccacgtatggatacgaaattgaact 20262728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 397
Target Start/End: Complemental strand, 27739030 - 27738981
Alignment:
Q  348 gactacaaccgccaatacggagcgactacgcaccaaactctttcgagcaa 397  Q
    |||||| |||||||| |||||||| | | |||||||||||||||||||||    
T  27739030 gactactaccgccaacacggagcgtcaatgcaccaaactctttcgagcaa 27738981  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 186
Target Start/End: Original strand, 31615634 - 31615662
Alignment:
Q  158 gcatatgaatcgtctgccaacacagaaac 186  Q
    |||||||||||||||||||||||||||||    
T  31615634 gcatatgaatcgtctgccaacacagaaac 31615662  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 36658791 - 36658755
Alignment:
Q  169 gtctgccaacacagaaacgatccaaggtccaacaact 205  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  36658791 gtctgccaacacagaaacgacccaagttccaacaact 36658755  T

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Target: chr4 (Bit Score: 89; Significance: 9e-43; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 152 - 280
Target Start/End: Complemental strand, 26070809 - 26070681
Alignment:
Q  152 aggtatgcatatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaaaaacttcagcaagccaaagcgccctttcgggccaaatca 251  Q
    ||||| |||| ||||||||| |||||||||||||||| |||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||    
T  26070809 aggtaggcatttgaatcgtccgccaacacagaaacgacccaaggtccaacaactccctaaaaaacatcggcaagccaaagcgccctttcgggccaaatca 26070710  T
Q  252 atccaatcgaagtcgagatcaatgaacaa 280  Q
    |||  ||||||||| ||||||||||||||    
T  26070709 atctgatcgaagtccagatcaatgaacaa 26070681  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 8069644 - 8069544
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaaaaacttcagcaagccaaagcgccctttcgggccaaatcaatccaatcg 260  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||    |||||||| |||| ||||||||| ||||||||||||| ||||    
T  8069644 tatgaatcgtctgtcaacacagaaacgattcaaggtccaacaactccctaaaaa----cagcaagcgaaagtgccctttcgagccaaatcaatccgatcg 8069549  T
Q  261 aagtc 265  Q
    |||||    
T  8069548 aagtc 8069544  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 133 - 286
Target Start/End: Complemental strand, 6020553 - 6020399
Alignment:
Q  133 gtgaatgtgtagagtatcgaggtatgcatatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaaaaacttcagcaagcca-aag 231  Q
    |||||||| ||||||||| | ||| |  |||||||||||| |||||| ||||||| |||||||||||| | || |||||||||| ||| ||| ||| ||     
T  6020553 gtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttccaaggtccaaaagctccctaaaaaacatcaacaaaccataaa 6020454  T
Q  232 cgccctttcgggccaaatcaatccaatcgaagtcgagatcaatgaacaagcgacg 286  Q
    ||||||||||| ||||| |||||  |  |||||| |||||||||||||| |||||    
T  6020453 cgccctttcggaccaaaccaatcagagtgaagtccagatcaatgaacaaacgacg 6020399  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 42912497 - 42912430
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaaaaacttcagcaagcca 228  Q
    |||||||||||||| ||||||||| ||||||||||||||||| || ||| |||||| |||||||||||    
T  42912497 tatgaatcgtctgctaacacagaagcgatccaaggtccaacagctccctgaaaaacatcagcaagcca 42912430  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 51702199 - 51702161
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtcca 199  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  51702199 tatgaatcgtctgccaaaacagaaacgatccaaggtcca 51702161  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 48804261 - 48804206
Alignment:
Q  56 aaacaacattactacgg---gcccagcgaacccacgtgtggatacgaaactgaact 108  Q
    |||||||| ||||||||   |||||||||||||||||||||||||||||| |||||    
T  48804261 aaacaacactactacggacagcccagcgaacccacgtgtggatacgaaaccgaact 48804206  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 48804179 - 48804131
Alignment:
Q  142 tagagtatcgaggtatgcatatgaatcgtctgccaacacagaaacgatc 190  Q
    ||||||||| ||||| || ||||||||||||||||||||| ||||||||    
T  48804179 tagagtatcaaggtaggcgtatgaatcgtctgccaacacataaacgatc 48804131  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 26070913 - 26070855
Alignment:
Q  45 aaaacaactcaaaacaacattactacgg---gcccagcgaacccacgtgtggatacgaa 100  Q
    |||||||||| |||||||| ||||||||   || |||||||||||| ||||||||||||    
T  26070913 aaaacaactctaaacaacactactacggatagcgcagcgaacccacatgtggatacgaa 26070855  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 270
Target Start/End: Original strand, 26287344 - 26287429
Alignment:
Q  186 cgatccaaggtccaacaacttcctaaaaaacttcagcaagcca-aagcgccctttcgggccaaatcaatccaatcgaagtcgagat 270  Q
    ||||||||||||||||||||  ||||||||| ||||||||||| || ||||||||| || |||| |||| | ||||||||| ||||    
T  26287344 cgatccaaggtccaacaactatctaaaaaacatcagcaagccataaacgccctttcaggtcaaaccaattcgatcgaagtccagat 26287429  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 12385910 - 12385862
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcct 209  Q
    ||||||| |||| ||||||||||||||||| ||| ||||||||||||||    
T  12385910 tatgaatagtctaccaacacagaaacgatctaagttccaacaacttcct 12385862  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 358 - 397
Target Start/End: Complemental strand, 2569389 - 2569350
Alignment:
Q  358 gccaatacggagcgactacgcaccaaactctttcgagcaa 397  Q
    |||||| ||||| |||||||||||||||||||||||||||    
T  2569389 gccaatccggagtgactacgcaccaaactctttcgagcaa 2569350  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 26286052 - 26286104
Alignment:
Q  133 gtgaatgtgtagagtatcgaggtatgcatatgaatcgtctgccaacacagaaa 185  Q
    ||||| || ||||||||| | ||| || |||||||||||||||||||||||||    
T  26286052 gtgaaagtttagagtatcaaagtaggcgtatgaatcgtctgccaacacagaaa 26286104  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 34935432 - 34935384
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcct 209  Q
    ||||||||||||||||||||| |||| || ||| ||||| |||||||||    
T  34935432 tatgaatcgtctgccaacacataaacaattcaatgtccatcaacttcct 34935384  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 15196011 - 15195960
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaa 212  Q
    ||||||||| ||||||||||||||||||| |||| |||||||||| ||||||    
T  15196011 tatgaatcggctgccaacacagaaacgattcaagttccaacaactccctaaa 15195960  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 12658573 - 12658521
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaaa 213  Q
    |||| ||| |||||||||||| ||||||||||||||||| || || |||||||    
T  12658573 tatggatcatctgccaacacataaacgatccaaggtccagcagctccctaaaa 12658521  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 17197721 - 17197765
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaact 205  Q
    ||||||||||||||||||| |||||| ||||||| |||| |||||    
T  17197721 tatgaatcgtctgccaacatagaaacaatccaagatccatcaact 17197765  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 17773648 - 17773692
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaact 205  Q
    |||||||| |||||||||||||||| ||| |||| ||||||||||    
T  17773648 tatgaatcatctgccaacacagaaatgattcaagttccaacaact 17773692  T

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Target: scaffold0527 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 205
Target Start/End: Original strand, 3095 - 3134
Alignment:
Q  166 atcgtctgccaacacagaaacgatccaaggtccaacaact 205  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  3095 atcgtctgccaacacagaaacgacccaagttccaacaact 3134  T

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Target: scaffold0527; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 205
Target Start/End: Original strand, 11158 - 11197
Alignment:
Q  166 atcgtctgccaacacagaaacgatccaaggtccaacaact 205  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  11158 atcgtctgccaacacagaaacgacccaagttccaacaact 11197  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 9513252 - 9513164
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaaaaacttcagcaagcca-aagcgccctttcgggccaaa 248  Q
    |||||||||||||||||||||  ||||||||| | |||| ||||| |||  |||||  |||||||| | || |||||||||| ||||||    
T  9513252 tatgaatcgtctgccaacacatgaacgatccacgatccatcaactccctgcaaaacaacagcaagcaataatcgccctttcgagccaaa 9513164  T

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