View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2296_high_2 (Length: 477)
Name: NF2296_high_2
Description: NF2296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2296_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 464
Target Start/End: Complemental strand, 36207889 - 36207444
Alignment:
| Q |
18 |
atattgatatggtataaattatgatggagatccatctttgaagttgatccactgaagcatcaaattattgatgatataaatcatactataactggtttct |
117 |
Q |
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| T |
36207889 |
atattgatatggtataaattatgatggagatccatctttgaagttgatccacagaagcagtaaattattgatgatataa-tcatactata-ctggtttct |
36207792 |
T |
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| Q |
118 |
tcaaaatttggtgcaagtttcaatggaacaggaagcttctttccattcaaagaaaatgtatatatggtaaaactaaacactagtaacaaactcaaactca |
217 |
Q |
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| T |
36207791 |
tcaaaatttggtgcaagtttcaatggaacaggaagcttctttccattcaaagaaaatgtatatacagtaaaactaaacactagtaacaaactcaaactca |
36207692 |
T |
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| Q |
218 |
catatgcatggttttat---tccataaccacaaaatctttttatctctatacaacaagagcaaatctagctaacaaaacaaattaaccactctttctaat |
314 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36207691 |
catatgcatggttttatacttccataaccacaaaatctttttatctctatacaacaagagcaaatctagctaacgaaacaaattaaccactctttctaat |
36207592 |
T |
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| Q |
315 |
attataataatatcatatacaaatgcaacttcaattatgctagcatataaactatgtatatatacttccctgtacatggaaaatataaatagctgctact |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
36207591 |
attataataatatcatatacaaatgcaacttcaattatgctagcatataaactatgtatatatacttccctgtacatg--aaaaataaatagctgctact |
36207494 |
T |
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| Q |
415 |
atactactatttcttattgtgtaaagggttggctcctgtaggtactcttc |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36207493 |
atactactatttcttattgtgtaaagggttggctcctgtaggtactcttc |
36207444 |
T |
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