View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2296_high_3 (Length: 375)
Name: NF2296_high_3
Description: NF2296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2296_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 14549244 - 14549572
Alignment:
| Q |
18 |
gtttctgccttggaaacaaacataccagtagttgtgtggcaagaaagttttgagaatgggcttgnnnnnnngctcaagactgagtgaagctacatattgt |
117 |
Q |
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| T |
14549244 |
gtttctgccttggaaacaaacataccagtagttgtgtggcaagaaagttttgagaatgggcttgaaaaaaagctcaagactgagtgaagctacatattgt |
14549343 |
T |
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| Q |
118 |
taggagttggtaaagatatgtttgatgattcaagacaatttgaaaataagttcaagacaaagcaagagcattagttaaaacattttagttcaaatggaga |
217 |
Q |
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| T |
14549344 |
taggagttggtaaagatatgtttgatgattcaagacaatttgaaaataagttcaagacaaagcaagagcattagttaaaacattttagttcaaagggaga |
14549443 |
T |
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| Q |
218 |
taaaaacaccaattttttgggtcaataacaagagtagacgcaaatgtaacgtgtaaaaagtttatttgatggtgcatatatgtatttgagtttcaaatat |
317 |
Q |
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| T |
14549444 |
taaaaacaccaattttttgggtcaataacaagagtagacgcaaatgtaacgtgtaaaaagtttatttgatggtgcatatatgtatttgagtttcaaatat |
14549543 |
T |
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| Q |
318 |
tggtttatacacagtttagaaaggttgct |
346 |
Q |
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| T |
14549544 |
tggtttctacacagtttagaaaggttgct |
14549572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 365
Target Start/End: Original strand, 14549594 - 14549622
Alignment:
| Q |
337 |
aaaggttgctgtatttaaattaagtataa |
365 |
Q |
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| T |
14549594 |
aaaggttgctgtatttaaattaagtataa |
14549622 |
T |
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