View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2296_low_1 (Length: 678)

Name: NF2296_low_1
Description: NF2296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2296_low_1
NF2296_low_1
[»] chr8 (4 HSPs)
chr8 (18-432)||(36465298-36465692)
chr8 (125-218)||(26617448-26617541)
chr8 (381-422)||(36474507-36474548)
chr8 (60-213)||(44145106-44145259)
[»] chr7 (3 HSPs)
chr7 (427-661)||(1109109-1109346)
chr7 (101-160)||(26529835-26529894)
chr7 (107-217)||(31047513-31047623)
[»] chr1 (3 HSPs)
chr1 (88-216)||(23722671-23722799)
chr1 (125-216)||(23085635-23085726)
chr1 (104-220)||(23949078-23949194)
[»] chr4 (3 HSPs)
chr4 (125-220)||(36895140-36895235)
chr4 (125-220)||(34390529-34390623)
chr4 (164-225)||(5614603-5614664)
[»] chr3 (2 HSPs)
chr3 (125-220)||(27156890-27156985)
chr3 (104-220)||(54346115-54346231)
[»] chr2 (1 HSPs)
chr2 (128-220)||(7305808-7305900)
[»] chr6 (1 HSPs)
chr6 (60-213)||(1223620-1223773)


Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 36465692 - 36465298
Alignment:
Q  18 ccatgcccaattaaaaaccaaccccttcaattnnnnnnnnnntagttataaaatcgtaggaaaccatacgaagctatacttggattgcgtgaatgcaatc 117  Q
    ||||||||||||||||||||||||||||||||          |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36465692 ccatgcccaattaaaaaccaaccccttcaattaaaaaaaa--tagttataaaatcgtaggaaactatacgaagctatacttggattgcgtgaatgcaatc 36465595  T
Q  118 atgaaatacatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||               
T  36465594 atgaaatacatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatccctacaccccatttactccttcaaaaat----------- 36465506  T
Q  218 cgcacatgtgctagcaataaataaaagtttgaatgtgatatggttcatgccatttccaaagtgttttccaatctccctctgttgtcggaaaattctttaa 317  Q
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36465505 -------gtgctggcaataaataaaagtttgaatgtgatatggttcatgccatttccaaagtgttttccaatctccctctgttgtcggaaaattctttaa 36465413  T
Q  318 agatcattatcaaggacttttatacttgtcacctcattgtatatgctgaatatcaaacctcaactttctaaccaatataacacgtgctacatgttgtctt 417  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36465412 agatcattatcaaggacttttatacttctcacctcattgtatatgctgaatatcaaacctcaactttctaaccaatataacacgtgctacatgttgtctt 36465313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 26617448 - 26617541
Alignment:
Q  125 acatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatgc 218  Q
    |||||||||||| |||||||  |||| |||||||||   ||||| |||||||| ||| |||||||| ||||||||   ||||| ||||||||||    
T  26617448 acatgaagaatagtttcatcttcatttccacaacacgggcaagtaggagagattccaccaccccatctactcctttggaaatttgtaagaatgc 26617541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 36474548 - 36474507
Alignment:
Q  381 ctttctaaccaatataacacgtgctacatgttgtcttagtgt 422  Q
    ||||||||||||||||||| |||||| |||||||||||||||    
T  36474548 ctttctaaccaatataacatgtgctatatgttgtcttagtgt 36474507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 213
Target Start/End: Complemental strand, 44145259 - 44145106
Alignment:
Q  60 tagttataaaatcgtaggaaaccatacgaagctatacttggattgcgtgaatgcaatcatgaaatacatgaagaataatttcatccccattaccacaaca 159  Q
    |||||||||| ||| | | ||| ||| ||||| |||| ||  |||| |||||||||||| |||  |||||||| | |||||||||  |||| ||||||||    
T  44145259 tagttataaagtcggaaggaacaatatgaagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacaatttcatcatcattcccacaaca 44145160  T
Q  160 caaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaag 213  Q
        ||||| ||||| ||||||||||||||| |||| ||||  ||||| |||||    
T  44145159 tgggcaagttggagaaatcccaacaccccatctacttcttcgcaaattagtaag 44145106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 427 - 661
Target Start/End: Complemental strand, 1109346 - 1109109
Alignment:
Q  427 cctattgcacttctgtcaagttgaattttaacaaacattattttgtacgatctgcgattgaaaacattgctatagtatgtcacgagccttaaggattgtt 526  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1109346 cctatagcacttctgtcaagttgaattttaacaaacattattttgtacgatctgcgattgaaaacattgctatagtatgtcacgagccttaaggattatt 1109247  T
Q  527 ttgtacgatatggacgcatatgaaccaaggcatgaaccaatatgctagatgacatgatgtatcac---ttgtgattctccgatactaaaaacagtccttg 623  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  1109246 ttgtacgatatggacgcatatgaaccaaggcatgaaccaatatgctagatgacatgatgtatcacttgttgtgattctccgatactaaaaacagtccttg 1109147  T
Q  624 tttgcactgttttaaacttgcaattagaatattactac 661  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  1109146 tttgcactgttataaacttgcaattagaatattactac 1109109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 26529835 - 26529894
Alignment:
Q  101 attgcgtgaatgcaatcatgaaatacatgaagaataatttcatccccattaccacaacac 160  Q
    ||||||||||||||||||| || |||||||||||  |||||||| ||||| |||||||||    
T  26529835 attgcgtgaatgcaatcataaagtacatgaagaaacatttcatcgccatttccacaacac 26529894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 107 - 217
Target Start/End: Complemental strand, 31047623 - 31047513
Alignment:
Q  107 tgaatgcaatcatgaaatacatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaat 206  Q
    |||||||||| ||| |  |||||||||| |||||||||  |||||||||||||   | ||||||| || |||||||||| |||| |||| |||| ||| |    
T  31047623 tgaatgcaattatggagcacatgaagaacaatttcatcatcattaccacaacattgataagtgggtgaaatcccaacactccatctacttcttcgaaagt 31047524  T
Q  207 tggtaagaatg 217  Q
    | |||| ||||    
T  31047523 tagtaataatg 31047513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 88 - 216
Target Start/End: Complemental strand, 23722799 - 23722671
Alignment:
Q  88 aagctatacttggattgcgtgaatgcaatcatgaaatacatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccc 187  Q
    |||| |||||||| | ||||| ||||||||  |||  |||||||||| |||||||||  |||| |||||||||  |||||| |||||||| ||| |||||    
T  23722799 aagccatacttgggtagcgtggatgcaatcgcgaagcacatgaagaacaatttcatcttcatttccacaacacggacaagtaggagagattccaccaccc 23722700  T
Q  188 catttactccttcaaaaattggtaagaat 216  Q
    ||||||||||||   ||||| ||||||||    
T  23722699 catttactccttttgaaatttgtaagaat 23722671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 216
Target Start/End: Original strand, 23085635 - 23085726
Alignment:
Q  125 acatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaat 216  Q
    |||||||||| |||||||||  |||| ||| |||||   ||||| |||||||| ||| |||||||||||||||||| |||||| ||||||||    
T  23085635 acatgaagaacaatttcatcttcatttccataacacgtgcaagtaggagagattccaccaccccatttactccttcgaaaatttgtaagaat 23085726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 104 - 220
Target Start/End: Complemental strand, 23949194 - 23949078
Alignment:
Q  104 gcgtgaatgcaatcatgaaatacatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaa 203  Q
    ||||| ||||||||  |||  |||||||||| | |||||||  |||| |||||||||   ||| | ||||| || ||| |||||||||||||||||   |    
T  23949194 gcgtggatgcaatcgcgaagcacatgaagaacagtttcatcttcatttccacaacacgggcaattaggagatattccaccaccccatttactcctttgga 23949095  T
Q  204 aattggtaagaatgcgc 220  Q
    |||| ||||||||||||    
T  23949094 aatttgtaagaatgcgc 23949078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 220
Target Start/End: Original strand, 36895140 - 36895235
Alignment:
Q  125 acatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatgcgc 220  Q
    ||||||| || |||||||||  |||| |||||||||   ||||| |||||||| ||| ||||||||||||||||||  ||||| ||||||||||||    
T  36895140 acatgaaaaacaatttcatcttcatttccacaacacgggcaagtaggagagattccaccaccccatttactccttcggaaatttgtaagaatgcgc 36895235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 125 - 220
Target Start/End: Original strand, 34390529 - 34390623
Alignment:
Q  125 acatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatgcgc 220  Q
    |||||||||| | |||||||  |||| ||||||||||  ||||| |||||||| ||| ||||| ||||||||||||  ||||| ||||||||||||    
T  34390529 acatgaagaacagtttcatcttcatttccacaacacaggcaagtaggagagattccaccaccc-atttactccttcggaaatttgtaagaatgcgc 34390623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 5614664 - 5614603
Alignment:
Q  164 caagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatgcgcacatg 225  Q
    ||||| |||||||| ||| || ||||| ||||||||||| |||| |||||||||||| ||||    
T  5614664 caagtaggagagattccaccatcccatctactccttcaataatttgtaagaatgcgcccatg 5614603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 125 - 220
Target Start/End: Original strand, 27156890 - 27156985
Alignment:
Q  125 acatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatgcgc 220  Q
    |||||||||| | |||||||  |||| |||||||||   ||||| |||||||| ||| ||||||||||||||||||  ||||| ||||| ||||||    
T  27156890 acatgaagaacagtttcatcttcatttccacaacacgggcaagtaggagagattccaccaccccatttactccttcggaaatttgtaagtatgcgc 27156985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 104 - 220
Target Start/End: Complemental strand, 54346231 - 54346115
Alignment:
Q  104 gcgtgaatgcaatcatgaaatacatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaa 203  Q
    ||||| ||||||||  |||  |||||||||| | |||||||  |||| |||||||||   ||| | ||||| || ||| |||||||||||||||||   |    
T  54346231 gcgtggatgcaatcgcgaagcacatgaagaacagtttcatcttcatttccacaacacgggcaattaggagatattccaccaccccatttactcctttgga 54346132  T
Q  204 aattggtaagaatgcgc 220  Q
    |||| ||||||||||||    
T  54346131 aatttgtaagaatgcgc 54346115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 128 - 220
Target Start/End: Original strand, 7305808 - 7305900
Alignment:
Q  128 tgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatgcgc 220  Q
    ||||||| | |||||||  |||| |||||||||   ||||| |||||||| ||| || ||| |||||| ||||||||||| ||||||||||||    
T  7305808 tgaagaacagtttcatcttcatttccacaacacgggcaagtaggagagattccaccatcccgtttacttcttcaaaaatttgtaagaatgcgc 7305900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 213
Target Start/End: Original strand, 1223620 - 1223773
Alignment:
Q  60 tagttataaaatcgtaggaaaccatacgaagctatacttggattgcgtgaatgcaatcatgaaatacatgaagaataatttcatccccattaccacaaca 159  Q
    |||||||||| ||| | | ||| ||| ||||| |||| ||  |||| |||||||||||| |||  |||||||| | | |||||||  |||| ||||||||    
T  1223620 tagttataaagtcggaaggaacaatatgaagccatacatgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcatcatttccacaaca 1223719  T
Q  160 caaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaag 213  Q
        ||||| ||||| ||||||||||||||| |||| ||||  ||||| |||||    
T  1223720 tgggcaagtaggagaaatcccaacaccccatctacttcttcgcaaattagtaag 1223773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University