View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2297_high_1 (Length: 364)
Name: NF2297_high_1
Description: NF2297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2297_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 10 - 327
Target Start/End: Original strand, 926236 - 926560
Alignment:
| Q |
10 |
agatgaaaggatcggagtgtgatttggttcaaatcgatgatctcttctt---tggcacatggtttggaggaaataaaagtttcttccataacttgtgttt |
106 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
926236 |
agattaaaggatcggagtgtgatttggttcaaatcgatgatctcttcttctttggcacatggtttggaggaaataaaagtttcttccataacttgtgttt |
926335 |
T |
|
| Q |
107 |
cttttatgagtttatttggatgcattcaacaagtgtttatttttaggctatttataaa----gtcatggagatgnnnnnnnggaagttgcacggaagaaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
926336 |
cttttatgagtttatttggatgcattcaacaagtgtttatttttaggctatttataaataaagtcatggagatgaaaaaaaggaagttgcacggaagaaa |
926435 |
T |
|
| Q |
203 |
ggtcgaagttgggatcaagcaagaaagtgaagtaatggatttcaaggttgcttcatgtctctgcctaccttggttgacttgaatatgcattaaatgggat |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
926436 |
ggtcgaagttgggatcaagcaagaaagtgaagtaatggatttcaaggctgcttcatgtctctgcctaccttggttgacttgaatatgcattaaatgggat |
926535 |
T |
|
| Q |
303 |
ccaaacctatgaagctcacatccat |
327 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
926536 |
ccaaacctatgaagctcacatccat |
926560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 928556 - 928641
Alignment:
| Q |
10 |
agatgaaaggatcggagtgtgatttggttcaaatcgatgatctcttctttggcacatggtttggaggaaataaaagtttcttccat |
95 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| || |||||||||||||| ||||| |
|
|
| T |
928556 |
agattaaaggatcggagtgtgatttggttcaaatcaatgatttcttctttgccacatggttttgaagaaataaaagtttcctccat |
928641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 233 - 315
Target Start/End: Original strand, 924473 - 924555
Alignment:
| Q |
233 |
agtaatggatttcaaggttgcttcatgtctctgcctaccttggttgacttgaatatgcattaaatgggatccaaacctatgaa |
315 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||||||| || |||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
924473 |
agtaagggatttcaaggctgctttatgtctctgcctgccatggttgacttgaatatgcattaaaatggatccaagcctatgaa |
924555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 939481 - 939569
Alignment:
| Q |
10 |
agatgaaaggatcggagtgtgatttggttcaaatcgatgatctcttctttggcacatggtttggaggaaataaaagtttcttccataac |
98 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||| ||| | | ||| ||| ||| ||||||||| |||||||||||||| |||||||| |
|
|
| T |
939481 |
agatgaaaaggtcggagtgtgatttggttcaaatcaatgctttgttcattgccacttggtttggaagaaataaaagtttcctccataac |
939569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 935689 - 935740
Alignment:
| Q |
10 |
agatgaaaggatcggagtgtgatttggttcaaatcgatgatctcttctttgg |
61 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
935689 |
agattaaaagatcggagtgtgatttggttcaaatcaatgatctcttctttgg |
935740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 924212 - 924278
Alignment:
| Q |
21 |
tcggagtgtgatttggttcaaatcgatgatctcttctttggcacatggtttggaggaaataaaagtt |
87 |
Q |
| |
|
|||||||||||||||| | | ||| || ||||||||||||||| ||||||||| |||||| ||||| |
|
|
| T |
924212 |
tcggagtgtgatttgggttagatcaattctctcttctttggcacctggtttggaagaaatagaagtt |
924278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University