View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2297_low_3 (Length: 237)

Name: NF2297_low_3
Description: NF2297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2297_low_3
NF2297_low_3
[»] chr2 (6 HSPs)
chr2 (1-221)||(42255520-42255740)
chr2 (1-56)||(12434200-12434255)
chr2 (1-56)||(7317208-7317263)
chr2 (1-56)||(26604111-26604166)
chr2 (53-128)||(27766434-27766509)
chr2 (107-155)||(21538043-21538092)
[»] chr4 (8 HSPs)
chr4 (1-56)||(42672731-42672786)
chr4 (1-56)||(44498286-44498341)
chr4 (1-56)||(51290305-51290360)
chr4 (1-52)||(39262031-39262082)
chr4 (1-56)||(47189513-47189568)
chr4 (6-56)||(27064824-27064874)
chr4 (6-56)||(27085928-27085978)
chr4 (1-53)||(25950351-25950401)
[»] chr5 (1 HSPs)
chr5 (1-56)||(16283947-16284002)
[»] chr3 (5 HSPs)
chr3 (1-52)||(34137744-34137795)
chr3 (1-56)||(36473528-36473583)
chr3 (1-42)||(14195588-14195629)
chr3 (1-52)||(19651960-19652011)
chr3 (53-131)||(13292458-13292536)
[»] chr1 (3 HSPs)
chr1 (1-56)||(29865964-29866019)
chr1 (1-56)||(43177644-43177699)
chr1 (1-56)||(44127521-44127576)
[»] chr8 (2 HSPs)
chr8 (1-56)||(1773477-1773532)
chr8 (1-42)||(1765028-1765069)
[»] chr7 (5 HSPs)
chr7 (1-52)||(31350594-31350645)
chr7 (1-56)||(38197930-38197985)
chr7 (1-42)||(36561537-36561578)
chr7 (1-56)||(16888321-16888377)
chr7 (1-49)||(29946806-29946854)
[»] chr6 (1 HSPs)
chr6 (108-161)||(11129949-11130002)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 42255520 - 42255740
Alignment:
Q  1 aatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaactttaactgtggcacagttaagtggatgagcacagaccttgatccgat 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42255520 aatttaaaatataaataattgttttaaaaattgtgcattcaattttagtcaactttaactgtggcatagttaagtggatgagcacagaccttgatccgat 42255619  T
Q  101 attaactgaaggtgagaaaaatacaagaggaagattggattatgttggctttttcaaatttctccaatgttttagtattggtcagagtttgaagtgtaaa 200  Q
    || ||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42255620 atcaactgaaggtgagaaaaatacaaaagggagattgaattatgttggctttttcaaatttctccagtgttttagtattggtcagagtttgaagtgtaaa 42255719  T
Q  201 gtctaactcagagtttgatag 221  Q
    |||||||| ||||||||||||    
T  42255720 gtctaactaagagtttgatag 42255740  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 12434255 - 12434200
Alignment:
Q  1 aatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 56  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  12434255 aatttaaaatataaataattgtcttaaaagttgtgcattcaactttattcaacttt 12434200  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 7317208 - 7317263
Alignment:
Q  1 aatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 56  Q
    ||||||||||| |||||| |||||||||| |||||||||||||| | |||||||||    
T  7317208 aatttaaaatagaaataaatgtcttaaaagttgtgcattcaattcttttcaacttt 7317263  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 26604111 - 26604166
Alignment:
Q  1 aatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 56  Q
    ||||||||||| |||||| ||| |||||| |||||| |||||| ||||||||||||    
T  26604111 aatttaaaatagaaataactgtattaaaagttgtgcgttcaatcttattcaacttt 26604166  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 27766509 - 27766434
Alignment:
Q  53 ctttaactgtggcacagttaagtggatgagcacagaccttgatccgatattaactgaaggtgagaaaaatacaaga 128  Q
    ||||||||||| ||| ||||| ||  |||||||| |||||| || ||||  ||||||||| |||||||||||||||    
T  27766509 ctttaactgtgacacggttaattgattgagcacaaaccttgctctgataccaactgaaggggagaaaaatacaaga 27766434  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 21538092 - 21538043
Alignment:
Q  107 tgaaggtgagaaaaatacaag-aggaagattggattatgttggctttttc 155  Q
    ||||||||||||||||||||| |||||||||| ||| |||| ||||||||    
T  21538092 tgaaggtgagaaaaatacaagaaggaagattgaattgtgtttgctttttc 21538043  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 42672731 - 42672786
Alignment:
Q  1 aatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 56  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  42672731 aatttaaaatagaaataattgtcttaaaaattgtgcattcaactttattcaacttt 42672786  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 44498286 - 44498341
Alignment:
Q  1 aatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 56  Q
    ||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||    
T  44498286 aatttaaaataaaaataattgtcttaaaagttgtgcattcaactttattcaacttt 44498341  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 51290360 - 51290305
Alignment:
Q  1 aatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 56  Q
    ||||||||||| ||||||||||||||||| |||||||||||| |||||| ||||||    
T  51290360 aatttaaaataaaaataattgtcttaaaagttgtgcattcaactttattaaacttt 51290305  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 39262031 - 39262082
Alignment:
Q  1 aatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaa 52  Q
    ||||||||| | ||| |||||||||||||||||||||||||| |||||||||    
T  39262031 aatttaaaaaagaaacaattgtcttaaaaattgtgcattcaactttattcaa 39262082  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 47189568 - 47189513
Alignment:
Q  1 aatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 56  Q
    ||||||||||| ||||| |||||| |||| |||||||||||| |||||||||||||    
T  47189568 aatttaaaatagaaatagttgtctcaaaagttgtgcattcaactttattcaacttt 47189513  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 27064874 - 27064824
Alignment:
Q  6 aaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 56  Q
    |||||| |||||||||| ||||||||||||||||||| |||||| ||||||    
T  27064874 aaaataaaaataattgttttaaaaattgtgcattcaactttattaaacttt 27064824  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 27085978 - 27085928
Alignment:
Q  6 aaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 56  Q
    |||||| |||||||||| ||||||||||||||||||| |||||| ||||||    
T  27085978 aaaataaaaataattgttttaaaaattgtgcattcaactttattaaacttt 27085928  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 25950401 - 25950351
Alignment:
Q  1 aatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaac 53  Q
    ||||||||||| |||||||||||| ||   |||||||||||||||||||||||    
T  25950401 aatttaaaatagaaataattgtctcaag--ttgtgcattcaattttattcaac 25950351  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16284002 - 16283947
Alignment:
Q  1 aatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 56  Q
    ||||||||||| ||||||||||||||||| |||||||||||  |||||||||||||    
T  16284002 aatttaaaatagaaataattgtcttaaaagttgtgcattcatctttattcaacttt 16283947  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 34137744 - 34137795
Alignment:
Q  1 aatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaa 52  Q
    ||||||||||| |||||||||| |||||| |||||||||||| |||||||||    
T  34137744 aatttaaaataaaaataattgttttaaaagttgtgcattcaactttattcaa 34137795  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 36473583 - 36473528
Alignment:
Q  1 aatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 56  Q
    ||||||||||| |||||||| |||||||| |||||||||||| |||||| ||||||    
T  36473583 aatttaaaatagaaataattttcttaaaagttgtgcattcaactttatttaacttt 36473528  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14195588 - 14195629
Alignment:
Q  1 aatttaaaatataaataattgtcttaaaaattgtgcattcaa 42  Q
    ||||||||||| ||||||||||||||||| ||||||||||||    
T  14195588 aatttaaaatagaaataattgtcttaaaagttgtgcattcaa 14195629  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 19651960 - 19652011
Alignment:
Q  1 aatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaa 52  Q
    ||||||||||| |||||||| |||||||| ||||| |||||| |||||||||    
T  19651960 aatttaaaatagaaataattatcttaaaagttgtgtattcaactttattcaa 19652011  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 13292536 - 13292458
Alignment:
Q  53 ctttaactgtggcacagttaagtggatgagcacagaccttgatccgatattaactgaaggtgagaaaaatacaagagga 131  Q
    ||||||||||||||| ||||||||| |||||||| ||| |  |  ||||  ||| |||||||||||||| |||||||||    
T  13292536 ctttaactgtggcacggttaagtggttgagcacaaaccgtactttgataccaaccgaaggtgagaaaaacacaagagga 13292458  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 29865964 - 29866019
Alignment:
Q  1 aatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 56  Q
    ||||||||||| |||||| ||| |||||| |||| |||||||||||||||||||||    
T  29865964 aatttaaaatagaaataaatgtattaaaagttgtacattcaattttattcaacttt 29866019  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 43177644 - 43177699
Alignment:
Q  1 aatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 56  Q
    ||||||||||| |||||| ||| |||||| ||||||||||||| ||||||||||||    
T  43177644 aatttaaaatagaaataaatgtattaaaagttgtgcattcaatcttattcaacttt 43177699  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 44127576 - 44127521
Alignment:
Q  1 aatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 56  Q
    ||||||||||| ||| | |||||| |||||||||| |||||| |||||||||||||    
T  44127576 aatttaaaatagaaacatttgtctaaaaaattgtgtattcaactttattcaacttt 44127521  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 1773477 - 1773532
Alignment:
Q  1 aatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 56  Q
    ||||||||||| |||||| |||||||||  ||||||||||| || |||||||||||    
T  1773477 aatttaaaatagaaataaatgtcttaaaggttgtgcattcatttctattcaacttt 1773532  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1765028 - 1765069
Alignment:
Q  1 aatttaaaatataaataattgtcttaaaaattgtgcattcaa 42  Q
    ||||||||||| |||||| |||||||||| ||||||||||||    
T  1765028 aatttaaaatagaaataaatgtcttaaaagttgtgcattcaa 1765069  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 31350645 - 31350594
Alignment:
Q  1 aatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaa 52  Q
    ||||||||||| |||||||| ||||||||||| |||||| || |||||||||    
T  31350645 aatttaaaatagaaataattatcttaaaaattctgcatttaactttattcaa 31350594  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 38197930 - 38197985
Alignment:
Q  1 aatttaaaatataaataattgtcttaaaaattgtgcattcaattttattcaacttt 56  Q
    ||||||||||| |||||| |||||||||| |||| ||||||| | |||||||||||    
T  38197930 aatttaaaataaaaataaatgtcttaaaagttgtacattcaaatctattcaacttt 38197985  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 36561578 - 36561537
Alignment:
Q  1 aatttaaaatataaataattgtcttaaaaattgtgcattcaa 42  Q
    |||||||||||||||||| |||||||||| |||| |||||||    
T  36561578 aatttaaaatataaataaatgtcttaaaagttgtacattcaa 36561537  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 16888321 - 16888377
Alignment:
Q  1 aatttaaaatataaataattgtcttaaaaattgtgcattcaa-ttttattcaacttt 56  Q
    ||||||||||| |||||||| |||||||| |||| ||||||| || |||||||||||    
T  16888321 aatttaaaataaaaataattctcttaaaagttgtacattcaacttgtattcaacttt 16888377  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29946806 - 29946854
Alignment:
Q  1 aatttaaaatataaataattgtcttaaaaattgtgcattcaattttatt 49  Q
    ||||||||||| |||||||||| | ||||||| ||||||||| ||||||    
T  29946806 aatttaaaataaaaataattgtttaaaaaattatgcattcaactttatt 29946854  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 11129949 - 11130002
Alignment:
Q  108 gaaggtgagaaaaatacaagaggaagattggattatgttggctttttcaaattt 161  Q
    ||||||||||||||||||||| || | ||| |||  ||||||||||||||||||    
T  11129949 gaaggtgagaaaaatacaagaagatggttgaattgcgttggctttttcaaattt 11130002  T

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