View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2298_low_1 (Length: 514)
Name: NF2298_low_1
Description: NF2298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2298_low_1 |
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| [»] scaffold0728 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 21244197 - 21244458
Alignment:
| Q |
11 |
agcagagaaaccaacaatgtgaacacgtatataattcaagtaagtaagcgaaaatgtgatccctaaaagagcagaggtaaaggagcagaggtaaaagaat |
110 |
Q |
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| T |
21244197 |
agcagagaaaccaacaatatgaagacgtatataattcaagtaagtaagcgaaaatgtgatccctaaaagagcagaggtaaa--------------agaat |
21244282 |
T |
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| Q |
111 |
gtttcaagtaatcaagaaacaaaacaggataaagagcatt-tccataacaccactaaagagcgttgttagggaaagcagtggcaagaagccgagtaagga |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21244283 |
gtttcaagtaatcaagaaacaaaacaggataaagagcattgtccataacaccactaaagagcgttgttagggaaagcagtggcaagaagccgagtaagga |
21244382 |
T |
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| Q |
210 |
tagaagaggaccaccaccggctctatcagaatcttcaactccgaagagaccgtcggagacttacttcacccatcaa |
285 |
Q |
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| T |
21244383 |
tagaagaggaccaccaccggctctatcagaatcttcaactccgaagagaccatcggagacttacttcacccatcaa |
21244458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 362 - 498
Target Start/End: Original strand, 21244456 - 21244592
Alignment:
| Q |
362 |
caagcaaaccacttccttaacagcaagatgctaataaggtgggaatgtcactaacacgatgctatgtcccctttacaccttatctgatgaagaggcggaa |
461 |
Q |
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| T |
21244456 |
caagcaaaccacttccttaacagcaagatgctaataaagtgggaatgtcactaacacgatgctacgtcccctttacaccttatctgatgaagaggcggaa |
21244555 |
T |
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| Q |
462 |
gaaaaatttaagtaaacttcattcctacaacactagt |
498 |
Q |
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| T |
21244556 |
gaaaaatctaagtaaactctattcctacaacactagt |
21244592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 255045 - 255107
Alignment:
| Q |
103 |
aaaagaatgtttcaagtaatcaagaaacaaaacaggataaagagcatt-tccataacaccact |
164 |
Q |
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| T |
255045 |
aaaagaatgtttcaagtaatcaagaaacaaaacaggataaagagcattgtccataacaccact |
255107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 193 - 271
Target Start/End: Original strand, 255256 - 255334
Alignment:
| Q |
193 |
aagaagccgagtaaggatagaagaggaccaccaccggctctatcagaatcttcaactccgaagagaccgtcggagactt |
271 |
Q |
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| T |
255256 |
aagaaaccgagtaaggatagaagaggaccaccgccggtactaacagaatcctcaactccgaatggaccgccggagactt |
255334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 254940 - 255013
Alignment:
| Q |
11 |
agcagagaaaccaacaatgtgaacacgtatataattcaagtaagtaagcgaaaatgtgatccctaaaagagcag |
84 |
Q |
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| T |
254940 |
agcagagaaaccaacaatgtgaagacctctgtaattcaaataagtaagagaaaaagtgatccctaagagagcag |
255013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 495
Target Start/End: Original strand, 38233387 - 38233455
Alignment:
| Q |
427 |
gtcccctttacaccttatctgatgaagaggcggaagaaaaatttaagtaaacttcattcctacaacact |
495 |
Q |
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| T |
38233387 |
gtcccctttacgccttatctgacgaagaagcagaggaaacaactaagtaaactcaattcctacaacact |
38233455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0728
Description:
Target: scaffold0728; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 479
Target Start/End: Complemental strand, 455 - 403
Alignment:
| Q |
427 |
gtcccctttacaccttatctgatgaagaggcggaagaaaaatttaagtaaact |
479 |
Q |
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| T |
455 |
gtcccctttacaccttatttgacgaagaagcagaagaaaaatctaagtaaact |
403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 494
Target Start/End: Original strand, 7705436 - 7705505
Alignment:
| Q |
425 |
atgtcccctttacaccttatctgatgaagaggcggaagaaaaatttaagtaaacttcattcctacaacac |
494 |
Q |
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| T |
7705436 |
atgtcccctttacaccttatccgacgaagaagcagaagaaataatttagtaaactcaatgcctacaacac |
7705505 |
T |
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