View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2298_low_2 (Length: 418)

Name: NF2298_low_2
Description: NF2298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2298_low_2
NF2298_low_2
[»] chr4 (3 HSPs)
chr4 (291-411)||(36286059-36286179)
chr4 (16-125)||(36286240-36286349)
chr4 (109-251)||(40823853-40823995)
[»] chr7 (12 HSPs)
chr7 (115-248)||(20284848-20284981)
chr7 (97-251)||(20243512-20243666)
chr7 (109-251)||(20263906-20264048)
chr7 (109-250)||(20168102-20168243)
chr7 (109-251)||(20303594-20303736)
chr7 (109-250)||(20279416-20279557)
chr7 (109-251)||(20289156-20289298)
chr7 (117-248)||(20294565-20294696)
chr7 (109-241)||(20231457-20231589)
chr7 (115-253)||(19939009-19939147)
chr7 (115-253)||(19970148-19970286)
chr7 (129-251)||(20273711-20273833)
[»] chr8 (15 HSPs)
chr8 (210-273)||(19348300-19348363)
chr8 (210-273)||(19379366-19379429)
chr8 (210-273)||(19500631-19500694)
chr8 (208-273)||(19454361-19454426)
chr8 (208-271)||(19551618-19551681)
chr8 (208-271)||(19581007-19581070)
chr8 (208-273)||(15943112-15943177)
chr8 (208-273)||(19407341-19407406)
chr8 (210-271)||(19526650-19526711)
chr8 (210-273)||(19415420-19415483)
chr8 (208-273)||(16006438-16006503)
chr8 (208-253)||(19149273-19149318)
chr8 (208-278)||(15963795-15963865)
chr8 (208-273)||(19187197-19187262)
chr8 (222-271)||(19399065-19399114)
[»] chr2 (5 HSPs)
chr2 (117-270)||(2707336-2707489)
chr2 (117-270)||(2723728-2723881)
chr2 (126-270)||(2745567-2745711)
chr2 (117-270)||(2717106-2717259)
chr2 (177-249)||(2712642-2712714)
[»] chr6 (2 HSPs)
chr6 (84-138)||(16872336-16872390)
chr6 (222-291)||(16654243-16654312)


Alignment Details
Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 291 - 411
Target Start/End: Complemental strand, 36286179 - 36286059
Alignment:
Q  291 tctgcacaaataattcaaagaaattaagacttaaaaatgtgtaagacaaggtgagaacattatacaataaagaaaaatatctgaaccactaaagactcat 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36286179 tctgcacaaataattcaaagaaattaagacttaaaaatgtgtaagacaaggtgagaacattatacaataaagaaaaaaatctgaaccactaaagactcat 36286080  T
Q  391 tagcatgtttcatttcctatg 411  Q
    |||||||||||||||||||||    
T  36286079 tagcatgtttcatttcctatg 36286059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 36286349 - 36286240
Alignment:
Q  16 actatatttgttggacaaagaggaaggcatatacttgctatgttccaataattcttcttgtcttgccattcacttcactgtctccaaataatttagccgt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36286349 actatatttgttggacaaagaggaaggcatatacttgctatgttccaacaattcttcttgtcttgccattcacttcactgtctccaaataatttagccgt 36286250  T
Q  116 accaaaatct 125  Q
    ||||||||||    
T  36286249 accaaaatct 36286240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 40823853 - 40823995
Alignment:
Q  109 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 208  Q
    ||||| ||||||| ||||||||||| ||||||| | | || || ||||| |||||||| | ||||| |||||| |||||||| |  ||| |  || ||||    
T  40823853 tagccataccaaagtctgatatttttggattcaactcctcgtctaacaagatgttacttgtctttagatctctgtgtataattctcaatttggaagctct 40823952  T
Q  209 gtgaagatatagcaatcctcgagcaattccttcaattatgtta 251  Q
     |||||||| |||||||||||||| |||||||| || ||||||    
T  40823953 atgaagataaagcaatcctcgagctattccttctatgatgtta 40823995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 115 - 248
Target Start/End: Complemental strand, 20284981 - 20284848
Alignment:
Q  115 taccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaag 214  Q
    ||||||| ||||||||||| ||||||||| | ||||| ||||| |  ||||| ||||| ||||||||||| ||||| | || |||| |||||||||||||    
T  20284981 taccaaagtctgatatttttggattcagctcctcatctaacaagacattacttgccttcaaatctctatgaataattcttagtctagaatctctgtgaag 20284882  T
Q  215 atatagcaatcctcgagcaattccttcaattatg 248  Q
    |||||||||||||||||| |||||||| ||||||    
T  20284881 atatagcaatcctcgagctattccttcgattatg 20284848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 97 - 251
Target Start/End: Complemental strand, 20243666 - 20243512
Alignment:
Q  97 ctccaaataatttagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaa 196  Q
    ||||||||| | |||||  |||||| ||||||||||| ||||||| | | ||||| ||||  |  ||||| ||||| ||||||||||| ||||| | ||     
T  20243666 ctccaaatattctagccagaccaaagtctgatatttttggattcaactcctcatctaacaggacattacttgccttcaaatctctatgaataattcttag 20243567  T
Q  197 tctataatctctgtgaagatatagcaatcctcgagcaattccttcaattatgtta 251  Q
     ||| |||||||||||||||||||||| ||||||||||||||||| || ||||||    
T  20243566 cctagaatctctgtgaagatatagcaaccctcgagcaattccttctatgatgtta 20243512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 20264048 - 20263906
Alignment:
Q  109 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 208  Q
    ||||| ||||||| ||||||||||| ||||||| | | ||||| ||||  |  ||||| ||||| ||||||||||| ||||| | ||  ||| |||||||    
T  20264048 tagccataccaaagtctgatatttttggattcaactcctcatctaacagaacattacttgccttcaaatctctatgaataattcttagcctagaatctct 20263949  T
Q  209 gtgaagatatagcaatcctcgagcaattccttcaattatgtta 251  Q
    ||||||||||||||| ||||||||||||||||| || ||||||    
T  20263948 gtgaagatatagcaaccctcgagcaattccttctataatgtta 20263906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 109 - 250
Target Start/End: Original strand, 20168102 - 20168243
Alignment:
Q  109 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 208  Q
    ||||| ||||||| ||||||||||| ||||||| | | ||||| ||||| |  ||||| ||||| ||||||||||| ||||| | || |||  |||||||    
T  20168102 tagccataccaaattctgatatttttggattcaactcctcatctaacaagacattacttgccttcaaatctctatgaataattcttagtctggaatctct 20168201  T
Q  209 gtgaagatatagcaatcctcgagcaattccttcaattatgtt 250  Q
    ||| |||||||||||||| ||||| |||||||| ||||||||    
T  20168202 gtggagatatagcaatccacgagctattccttctattatgtt 20168243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 20303736 - 20303594
Alignment:
Q  109 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 208  Q
    ||||| ||||||| || || ||||| ||||||||| | ||||| ||||| || ||||| | ||| |||||||| |||||||| | || |||  |||||||    
T  20303736 tagccataccaaagtcggaaatttttggattcagctcctcatctaacaagatattacttgtcttcaaatctctgtgtataattcttagtctcgaatctct 20303637  T
Q  209 gtgaagatatagcaatcctcgagcaattccttcaattatgtta 251  Q
    ||||||||| | ||||||||||||||||||||| || ||||||    
T  20303636 gtgaagatacaacaatcctcgagcaattccttctataatgtta 20303594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 109 - 250
Target Start/End: Complemental strand, 20279557 - 20279416
Alignment:
Q  109 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 208  Q
    ||||| ||||||| ||||||||||| ||||||||| | ||||| ||||  |  ||||| ||||| |||||||| || ||||| | || |||  |||||||    
T  20279557 tagccataccaaagtctgatatttttggattcagctcctcatctaacaggacattacttgccttcaaatctctgtgaataattcttagtctggaatctct 20279458  T
Q  209 gtgaagatatagcaatcctcgagcaattccttcaattatgtt 250  Q
    |||||||||||||||||| ||||| ||||||||  |||||||    
T  20279457 gtgaagatatagcaatccgcgagctattccttctgttatgtt 20279416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 20289298 - 20289156
Alignment:
Q  109 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 208  Q
    ||||| ||||||| ||||||||||| ||||||| | | || || ||||| |||||||| | |||||||||||| |||||||| |  ||| |  |||||||    
T  20289298 tagccataccaaagtctgatattttgggattcaactcctcgtctaacaagatgttacttgtctttaaatctctgtgtataattctcaatttggaatctct 20289199  T
Q  209 gtgaagatatagcaatcctcgagcaattccttcaattatgtta 251  Q
     |||||||| |||||||||||||| ||||| || || ||||||    
T  20289198 atgaagataaagcaatcctcgagctattccatctataatgtta 20289156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 117 - 248
Target Start/End: Complemental strand, 20294696 - 20294565
Alignment:
Q  117 ccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagat 216  Q
    ||||| || |||||||| ||||||||| | ||||| ||||  |  ||||| ||||| ||||||||||| ||||| | ||  ||| |||||| ||||||||    
T  20294696 ccaaagtccgatatttttggattcagctcctcatctaacaggacattacttgccttcaaatctctatgaataattcttagcctagaatctcggtgaagat 20294597  T
Q  217 atagcaatcctcgagcaattccttcaattatg 248  Q
    | |||||||||||||| |||||||| ||||||    
T  20294596 acagcaatcctcgagctattccttctattatg 20294565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 241
Target Start/End: Complemental strand, 20231589 - 20231457
Alignment:
Q  109 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 208  Q
    ||||| ||||||| ||||||||||| ||||||| |   ||||| ||||  |  ||||| ||||| ||| ||||||| ||||| | ||  ||| |||||||    
T  20231589 tagccataccaaagtctgatatttttggattcaacttctcatctaacaggacattacttgccttcaaacctctatgaataattcttagcctagaatctct 20231490  T
Q  209 gtgaagatatagcaatcctcgagcaattccttc 241  Q
    ||||||||||| ||| |||||||||||||||||    
T  20231489 gtgaagatataacaaccctcgagcaattccttc 20231457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 253
Target Start/End: Complemental strand, 19939147 - 19939009
Alignment:
Q  115 taccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaag 214  Q
    ||||||| ||||||||||| ||||| ||| | | ||| | ||| || ||||| | ||| |||||||||||||||||   || |||  |||||||||| ||    
T  19939147 taccaaagtctgatatttttggattaagctcattatctagcaagatattacttggcttcaaatctctatgtataatttttagtctggaatctctgtgcag 19939048  T
Q  215 atatagcaatcctcgagcaattccttcaattatgttaaa 253  Q
    ||| | |||||||||||| |||||||| |||||| ||||    
T  19939047 atacaacaatcctcgagctattccttctattatgctaaa 19939009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 253
Target Start/End: Complemental strand, 19970286 - 19970148
Alignment:
Q  115 taccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaag 214  Q
    ||||||| ||||||||||| ||||| ||| | | ||| | ||| || ||||| | ||| |||||||||||||||||   || |||  |||||||||| ||    
T  19970286 taccaaagtctgatatttttggattaagctcattatctagcaagatattacttggcttcaaatctctatgtataatttttagtctggaatctctgtgcag 19970187  T
Q  215 atatagcaatcctcgagcaattccttcaattatgttaaa 253  Q
    ||| | |||||||||||| |||||||| |||||| ||||    
T  19970186 atacaacaatcctcgagctattccttctattatgctaaa 19970148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 251
Target Start/End: Complemental strand, 20273833 - 20273711
Alignment:
Q  129 attttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagatatagcaatcctc 228  Q
    ||||| ||||||||| | || || ||||| |  ||||| ||||| ||||||||||| ||||| | ||  ||  |||||||||||||||||| ||| ||||    
T  20273833 atttttggattcagctcctcgtctaacaagacattacttgccttcaaatctctatgaataattcttagcctggaatctctgtgaagatataacaaccctc 20273734  T
Q  229 gagcaattccttcaattatgtta 251  Q
    |||| |||||||| || ||||||    
T  20273733 gagctattccttctataatgtta 20273711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 210 - 273
Target Start/End: Complemental strand, 19348363 - 19348300
Alignment:
Q  210 tgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 273  Q
    |||||||| ||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||    
T  19348363 tgaagatagagcaatccttgagcaattccttctattatgttaaaacgcttcttccaatctagca 19348300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 210 - 273
Target Start/End: Complemental strand, 19379429 - 19379366
Alignment:
Q  210 tgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 273  Q
    |||||||| ||||||||| ||||||||||||| |||||||| |||||||| |||||||||||||    
T  19379429 tgaagatagagcaatccttgagcaattccttctattatgttgaaacgcttcttccaatctagca 19379366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 210 - 273
Target Start/End: Original strand, 19500631 - 19500694
Alignment:
Q  210 tgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 273  Q
    |||||||| ||||||||| ||||||||||||| |||||||| |||||||| |||||||||||||    
T  19500631 tgaagatagagcaatccttgagcaattccttctattatgttgaaacgcttcttccaatctagca 19500694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 19454426 - 19454361
Alignment:
Q  208 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 273  Q
    |||||||||| || |||||| ||| ||||||||| |||||||| ||||||||||||||||||||||    
T  19454426 tgtgaagatagagtaatccttgagaaattccttctattatgttgaaacgctttttccaatctagca 19454361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 271
Target Start/End: Original strand, 19551618 - 19551681
Alignment:
Q  208 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctag 271  Q
    |||||||||| || |||||| ||| ||||||||| |||||||| ||||||||||||||||||||    
T  19551618 tgtgaagatagagtaatccttgagaaattccttctattatgttgaaacgctttttccaatctag 19551681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 271
Target Start/End: Complemental strand, 19581070 - 19581007
Alignment:
Q  208 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctag 271  Q
    |||||||||| || |||||| ||| ||||||||| |||||||| ||||||||||||||||||||    
T  19581070 tgtgaagatagagtaatccttgagaaattccttctattatgttgaaacgctttttccaatctag 19581007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 15943177 - 15943112
Alignment:
Q  208 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 273  Q
    ||||||||||||| |||||| |||| |||||||| |||||| |||| ||||| |||||||||||||    
T  15943177 tgtgaagatatagtaatccttgagcgattccttcgattatgctaaagcgcttattccaatctagca 15943112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 19407406 - 19407341
Alignment:
Q  208 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 273  Q
    |||||||||| || |||||| ||| ||||||||| |||| ||| ||||||||||||||||||||||    
T  19407406 tgtgaagatagagtaatccttgagaaattccttctattacgttgaaacgctttttccaatctagca 19407341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 19526650 - 19526711
Alignment:
Q  210 tgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctag 271  Q
    |||||||| || |||||| ||| ||||||||| |||||||| ||||||||||||||||||||    
T  19526650 tgaagatagagtaatccttgagaaattccttctattatgttgaaacgctttttccaatctag 19526711  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 273
Target Start/End: Complemental strand, 19415483 - 19415420
Alignment:
Q  210 tgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 273  Q
    |||||||| || |||||| ||| ||||||||| |||||||| |||||||| |||||||||||||    
T  19415483 tgaagatagagtaatccttgagaaattccttcgattatgttgaaacgcttcttccaatctagca 19415420  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 16006503 - 16006438
Alignment:
Q  208 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 273  Q
    ||||||| || || |||||| ||||||||||||| |||||| ||||||| || |||||||||||||    
T  16006503 tgtgaaggtaaagtaatccttgagcaattccttctattatgctaaaacgtttgttccaatctagca 16006438  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 19149273 - 19149318
Alignment:
Q  208 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaa 253  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||    
T  19149273 tgtgaagatatagtaatccttgagcaattccttctattatgttaaa 19149318  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 278
Target Start/End: Original strand, 15963795 - 15963865
Alignment:
Q  208 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagcattttt 278  Q
    ||||||| ||||| | |||| ||||||||||||| |||||| |||| || || |||||||||| |||||||    
T  15963795 tgtgaaggtatagtagtccttgagcaattccttcgattatgctaaagcgtttgttccaatctaacattttt 15963865  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 19187262 - 19187197
Alignment:
Q  208 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 273  Q
    ||||||| ||||| | |||| ||||||||||||| |||||| |||| || || |||||||||||||    
T  19187262 tgtgaaggtatagtagtccttgagcaattccttctattatgctaaagcgtttattccaatctagca 19187197  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 19399114 - 19399065
Alignment:
Q  222 aatcctcgagcaattccttcaattatgttaaaacgctttttccaatctag 271  Q
    |||||| ||| ||||||||| |||||||| |||||||| |||||||||||    
T  19399114 aatccttgagaaattccttctattatgttgaaacgcttcttccaatctag 19399065  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 270
Target Start/End: Original strand, 2707336 - 2707489
Alignment:
Q  117 ccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagat 216  Q
    |||||||| |||||||| |||||||   || |||| ||||| || ||||| | |||||  ||||||||||| || | ||||||  ||||||| |||||||    
T  2707336 ccaaaatcagatatttttggattcaattctccatccaacaagatattacttggctttaggtctctatgtattattcttaatcttgaatctctatgaagat 2707435  T
Q  217 atagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatcta 270  Q
    | ||||  |||||||  ||||||||||||||| | ||||| |||||||||||||    
T  2707436 aaagcagacctcgagagattccttcaattatggttaaacgttttttccaatcta 2707489  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 270
Target Start/End: Original strand, 2723728 - 2723881
Alignment:
Q  117 ccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagat 216  Q
    ||||| || |||||||| ||||||||  || |||| ||||| || ||||||| |||||  ||||||||||| || | ||||||  ||||||| |||||||    
T  2723728 ccaaagtcggatatttttggattcagttctccatccaacaaaatattactcggctttaggtctctatgtattattcttaatctcgaatctctatgaagat 2723827  T
Q  217 atagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatcta 270  Q
    | |||| ||| ||||  ||||| ||||||||||  || || |||| ||||||||    
T  2723828 aaagcagtccgcgagagattccctcaattatgtataagcgtttttgccaatcta 2723881  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 270
Target Start/End: Original strand, 2745567 - 2745711
Alignment:
Q  126 gatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagatatagcaatc 225  Q
    |||||||| ||||||||  || |||| ||||| || ||||||| |||||  ||||||||||| || | ||||||  ||||||| |||||||| |||| ||    
T  2745567 gatatttttggattcagttctccatccaacaaaatattactcggctttaggtctctatgtattattcttaatctcgaatctctatgaagataaagcagtc 2745666  T
Q  226 ctcgagcaattccttcaattatgttaaaacgctttttccaatcta 270  Q
    | ||||  ||||| ||||||||||  || || |||| ||||||||    
T  2745667 cgcgagagattccctcaattatgtataagcgtttttgccaatcta 2745711  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 270
Target Start/End: Original strand, 2717106 - 2717259
Alignment:
Q  117 ccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagat 216  Q
    ||||| || |||||||| ||||||||  || |||| ||||| || |||||||  ||||  |||||||| || || | ||||||  ||||||| |||||||    
T  2717106 ccaaagtcggatatttttggattcagttctccatccaacaaaatattactcggttttaggtctctatggattattcttaatctcgaatctctatgaagat 2717205  T
Q  217 atagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatcta 270  Q
    | |||| ||| ||||  ||||||||||||||||  || || |||| ||||||||    
T  2717206 aaagcagtccgcgagagattccttcaattatgtataagcgtttttgccaatcta 2717259  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 2712642 - 2712714
Alignment:
Q  177 tctctatgtataatgcgtaatctataatctctgtgaagatatagcaatcctcgagcaattccttcaattatgt 249  Q
    ||||||||||| || | ||||||  ||||||  |||||||| |||||||||||||  ||||| ||||||||||    
T  2712642 tctctatgtattattcttaatcttgaatctcgatgaagataaagcaatcctcgagagattccctcaattatgt 2712714  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 16872336 - 16872390
Alignment:
Q  84 ttcacttcactgtctccaaataatttagccgtaccaaaatctgatattttcggat 138  Q
    |||| ||||||||||||||||| ||||||| | | |||| |||||||||||||||    
T  16872336 ttcatttcactgtctccaaatattttagccattcgaaaacctgatattttcggat 16872390  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 16654312 - 16654243
Alignment:
Q  222 aatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagcattttttgtttatatggat 291  Q
    |||| ||||||||||||||||| ||||||||||| || || |||||||  ||| | ||||||| ||||||    
T  16654312 aatcttcgagcaattccttcaactatgttaaaacactattcccaatcttacatctgttgtttaaatggat 16654243  T

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