View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2298_low_3 (Length: 341)

Name: NF2298_low_3
Description: NF2298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2298_low_3
NF2298_low_3
[»] chr4 (8 HSPs)
chr4 (34-324)||(9194890-9195183)
chr4 (230-292)||(9165029-9165091)
chr4 (230-292)||(9261242-9261304)
chr4 (289-324)||(9204887-9204922)
chr4 (289-324)||(9209106-9209141)
chr4 (232-292)||(9181149-9181209)
chr4 (256-292)||(9156666-9156702)
chr4 (230-290)||(9173521-9173581)
[»] scaffold0135 (7 HSPs)
scaffold0135 (289-324)||(2970-3005)
scaffold0135 (289-324)||(7185-7220)
scaffold0135 (289-324)||(11400-11435)
scaffold0135 (289-324)||(15615-15650)
scaffold0135 (289-324)||(19830-19865)
scaffold0135 (289-324)||(24045-24080)
scaffold0135 (289-324)||(28260-28295)
[»] chr6 (1 HSPs)
chr6 (289-324)||(21092429-21092464)
[»] scaffold1064 (1 HSPs)
scaffold1064 (230-273)||(2744-2787)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 34 - 324
Target Start/End: Original strand, 9194890 - 9195183
Alignment:
Q  34 taatttttattgaatagcaatatgcttctaaaacagagttgtaactaaaaattaaaacaaatatcaaataacaaatcttaaacctctacttttataggtc 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  9194890 taatttttattgaatagcaatatgcttctaaaacagagttgtaactaaaaattaaaacaaatatcaaataacaaatcttaaacctctacttctatagctc 9194989  T
Q  134 ataagtaactgaaatgttaaaacgaacagtcttgctcaactacttccataagtttccctcagaaag---nnnnnnnnnnnctacttccataatttttact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||    
T  9194990 ataagtaactgaaatgttaaaacgaacagtcttgctcaactacttccataagtttccctcagaaagaaaaaaaaaaaaaactacttccataatttttact 9195089  T
Q  231 tctgaaatattgtttcttatcttgattttcttattattttaggcaaaagaacaaatttcaaaagtgaatagaatcaagagataaaccatgatta 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9195090 tctgaaatattgtttcttatcttgattttcttattattttaggcaaaagaacaaatttcaaaagtgaatagaatcaagagataaaccatgatta 9195183  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 292
Target Start/End: Complemental strand, 9165091 - 9165029
Alignment:
Q  230 ttctgaaatattgtttcttatcttgattttcttattattttaggcaaaagaacaaatttcaaa 292  Q
    ||||||||||||||| ||||| ||||| |||||||||||||||||| ||  ||||||||||||    
T  9165091 ttctgaaatattgttgcttattttgatgttcttattattttaggcagaactacaaatttcaaa 9165029  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 9261242 - 9261304
Alignment:
Q  230 ttctgaaatattgtttcttatcttgattttcttattattttaggcaaaagaacaaatttcaaa 292  Q
    ||||||||||||||| ||||| |||| |||||| |||||||||||||||| ||||| ||||||    
T  9261242 ttctgaaatattgttgcttattttgaatttctttttattttaggcaaaagtacaaagttcaaa 9261304  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 9204887 - 9204922
Alignment:
Q  289 caaaagtgaatagaatcaagagataaaccatgatta 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  9204887 caaaagtgaatagaatcaagagataaaccatgatta 9204922  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 9209106 - 9209141
Alignment:
Q  289 caaaagtgaatagaatcaagagataaaccatgatta 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  9209106 caaaagtgaatagaatcaagagataaaccatgatta 9209141  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 9181149 - 9181209
Alignment:
Q  232 ctgaaatattgtttcttatcttgattttcttattattttaggcaaaagaacaaatttcaaa 292  Q
    |||||||| |||| ||||| ||||  |||||||||||||||||| ||| ||||||||||||    
T  9181149 ctgaaatactgttgcttattttgaagttcttattattttaggcagaagtacaaatttcaaa 9181209  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 9156666 - 9156702
Alignment:
Q  256 ttttcttattattttaggcaaaagaacaaatttcaaa 292  Q
    |||| |||||||||||||||||||| |||||||||||    
T  9156666 tttttttattattttaggcaaaagaccaaatttcaaa 9156702  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 9173521 - 9173581
Alignment:
Q  230 ttctgaaatattgtttcttatcttgattttcttattattttaggcaaaagaacaaatttca 290  Q
    |||||||||||||||||| || ||   || ||| |||||||||||||| ||||||||||||    
T  9173521 ttctgaaatattgtttctcattttttattccttgttattttaggcaaaggaacaaatttca 9173581  T

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Target: scaffold0135 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 2970 - 3005
Alignment:
Q  289 caaaagtgaatagaatcaagagataaaccatgatta 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  2970 caaaagtgaatagaatcaagagataaaccatgatta 3005  T

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Target: scaffold0135; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 7185 - 7220
Alignment:
Q  289 caaaagtgaatagaatcaagagataaaccatgatta 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  7185 caaaagtgaatagaatcaagagataaaccatgatta 7220  T

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Target: scaffold0135; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 11400 - 11435
Alignment:
Q  289 caaaagtgaatagaatcaagagataaaccatgatta 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  11400 caaaagtgaatagaatcaagagataaaccatgatta 11435  T

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Target: scaffold0135; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 15615 - 15650
Alignment:
Q  289 caaaagtgaatagaatcaagagataaaccatgatta 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  15615 caaaagtgaatagaatcaagagataaaccatgatta 15650  T

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Target: scaffold0135; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 19830 - 19865
Alignment:
Q  289 caaaagtgaatagaatcaagagataaaccatgatta 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  19830 caaaagtgaatagaatcaagagataaaccatgatta 19865  T

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Target: scaffold0135; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 24045 - 24080
Alignment:
Q  289 caaaagtgaatagaatcaagagataaaccatgatta 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  24045 caaaagtgaatagaatcaagagataaaccatgatta 24080  T

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Target: scaffold0135; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 28260 - 28295
Alignment:
Q  289 caaaagtgaatagaatcaagagataaaccatgatta 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  28260 caaaagtgaatagaatcaagagataaaccatgatta 28295  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 21092464 - 21092429
Alignment:
Q  289 caaaagtgaatagaatcaagagataaaccatgatta 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  21092464 caaaagtgaatagaatcaagagataaaccatgatta 21092429  T

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Target: scaffold1064 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 273
Target Start/End: Original strand, 2744 - 2787
Alignment:
Q  230 ttctgaaatattgtttcttatcttgattttcttattattttagg 273  Q
    ||||||||||||||| ||||| |||| |||||||||||||||||    
T  2744 ttctgaaatattgttgcttattttgaatttcttattattttagg 2787  T

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