View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2298_low_4 (Length: 249)
Name: NF2298_low_4
Description: NF2298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2298_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 246
Target Start/End: Original strand, 18671999 - 18672238
Alignment:
| Q |
7 |
tagcataggcaacgatgacaccatgaaatttagagctatattatttcttgtatcgaaaatcgtttgtagtatttaataatttcattactaatcagattgt |
106 |
Q |
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| T |
18671999 |
tagcataggcaacgacgacaccgtgaaatttagagctatactatttcttgtaacgaaagtcgtttgtagcatttaataatttcattactaatcagattgt |
18672098 |
T |
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| Q |
107 |
taatacacaagggaataataaaacaaatggtgggacgagatgatgatatggtttctgcggcaagagcatgagctatctcatttgtttgttgtctaatcag |
206 |
Q |
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| T |
18672099 |
taatacgcaagggaataataaaacaaatggtgggactagatgatgatatggtttctgcggcaagagcatgagctatctcatttgtttgttgtctaatcag |
18672198 |
T |
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| Q |
207 |
actcattctttgaggagtgcaaacatctcaactgagttgg |
246 |
Q |
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| T |
18672199 |
actcattctttaaggagtgcaaacatctcaagtgagttgg |
18672238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 7 - 238
Target Start/End: Complemental strand, 18674758 - 18674514
Alignment:
| Q |
7 |
tagcataggcaacgatgacaccatgaaatttagagctatattatttcttgtatcgaaaatcgtttgtagtatttaataatttcattactaatcagattgt |
106 |
Q |
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| T |
18674758 |
tagcataggcaacgacgacaccgtgaaatttagagatataccatttcttgtaacgaaagtcatttgcagcatttaataatttcattactgatcagattgt |
18674659 |
T |
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| Q |
107 |
-------------taatacacaagggaataataaaacaaatggtgggacgagatgatgatatggtttctgcggcaagagcatgagctatctcatttgttt |
193 |
Q |
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| T |
18674658 |
ctaatcagatcgttaacacacaagggaataataaaacaaatggtcggactagatgatgatttggtttctgctgcaagaacatgaactacctcatttgttt |
18674559 |
T |
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| Q |
194 |
gttgtctaatcagactcattctttgaggagtgcaaacatctcaac |
238 |
Q |
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| T |
18674558 |
gttgtctaatcagactcattttttgagcagtgcaaacaactcaac |
18674514 |
T |
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