View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2299_high_1 (Length: 363)
Name: NF2299_high_1
Description: NF2299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2299_high_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 22956253 - 22956602
Alignment:
| Q |
18 |
gtttttgagtatttggaagcacatgaaccttaaatcatggcaagatgttaatgagctatgcacacaagtggtagagcgagttcataatttaatagagaaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22956253 |
gtttttgagtatttggaagcacatgaaccttaaatcatggcaagatgttaatgagctatgcacacaagtggtagagcgagttcatcatttaatagagaaa |
22956352 |
T |
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| Q |
118 |
tgtccataagatagttgctcgttgtcatcattctcacgttgataatgtcgacttcatacttgattcaaaaacaatttcgaatcctttccatattaatcga |
217 |
Q |
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||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22956353 |
tgtccttaagatagttgctcgttgtcatcattctcatgttgataatgtcgacttcatgcttgattcaaaaacaatttcgaatcctttccatattaatcga |
22956452 |
T |
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| Q |
218 |
gttgatattatagagtttggttatttcctaaccagccttgctatatagtgcgaaatatatgcgcacgactacacacgataaaaggttggtaggattttta |
317 |
Q |
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|||||||||| | ||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
22956453 |
gttgatattacaaagtttggttatttcctaaccaaccttgctacatagtgtgaaatatatgcgcacgactacacacgataaatggttggaaggattttta |
22956552 |
T |
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| Q |
318 |
cattt------taaatagagttaaaacacagcctaaatccaatggttatg |
361 |
Q |
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| T |
22956553 |
cattttaaaaataaatagagttaaaacacagcctaaatccaatggttatg |
22956602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 250 - 363
Target Start/End: Complemental strand, 42538065 - 42537946
Alignment:
| Q |
250 |
cagccttgctatatagtgcgaaatatatgcgcacgactacacacgataaaaggttggtaggatttttacattt------taaatagagttaaaacacagc |
343 |
Q |
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| T |
42538065 |
cagccttgctatatagtgcgaaatatatgcgcacgactacacacgataaaaggttggtaggatttttacattttaaaaataaatagagttaaaacacagc |
42537966 |
T |
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| Q |
344 |
ctaaatccaatggttatggt |
363 |
Q |
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| T |
42537965 |
ctaaatccaatggttatggt |
42537946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 250 - 348
Target Start/End: Original strand, 50558311 - 50558413
Alignment:
| Q |
250 |
cagccttgctatatagtgcgaaatatatgcgcacgactacacacgataaaaggttggtaggatttttacattt------taaatagagttaaaacacagc |
343 |
Q |
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| T |
50558311 |
cagccttgctatataatgcgaagtatatgc-cacgacg-cacacgataaaaggttggtaggatttttacatttttaaaataaataaagttaaaacacagc |
50558408 |
T |
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| Q |
344 |
ctaaa |
348 |
Q |
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||||| |
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| T |
50558409 |
ctaaa |
50558413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 326
Target Start/End: Original strand, 20761081 - 20761159
Alignment:
| Q |
249 |
ccagccttgctatatagtgcgaaatatatgcgcacgac-tacacacgataaaaggttggtaggatttttacattttaaa |
326 |
Q |
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| T |
20761081 |
ccagccttgctatatggtacgaaatatatgtgcacgacttgcacaagataaaaggttggtagaattcttaaattttaaa |
20761159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 6979859 - 6979788
Alignment:
| Q |
19 |
tttttgagtatttggaagcacatgaaccttaaatcatggcaagatgttaatgagctatgcacacaagtggta |
90 |
Q |
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| T |
6979859 |
ttttggagtatttggaagaacatgaatcttaaattatgggaagatgttagtgagctatgcgcacaagtggta |
6979788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 1933453 - 1933377
Alignment:
| Q |
247 |
aaccagccttgctatatagtgcgaaatatatgcgcacgactacacacgataaaaggttggtaggatttttacatttt |
323 |
Q |
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||||| |||||||||||||||| |||||||||||||||||| ||||| |||| | | ||||| ||||||||||||| |
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| T |
1933453 |
aaccatccttgctatatagtgcaaaatatatgcgcacgactgcacacaataacacgccggtagaatttttacatttt |
1933377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 360
Target Start/End: Complemental strand, 17725168 - 17725052
Alignment:
| Q |
250 |
cagccttgctatatagtgcgaaatatatgcgcacgac-tacacacgataaaaggttggtaggatttttacatttt-----aaatagagttaaaacacagc |
343 |
Q |
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|||| ||||||||| |||||||| |||||| ||||| | |||||||||||| | ||||||| |||||||||||| ||||| | |||||||||||| |
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| T |
17725168 |
cagctttgctatatggtgcgaaagttatgcgtacgacctgcacacgataaaaagctggtaggttttttacatttttaaataaataaaattaaaacacagc |
17725069 |
T |
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| Q |
344 |
ctaaatccaatggttat |
360 |
Q |
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|||||||||| |||||| |
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| T |
17725068 |
ctaaatccaaaggttat |
17725052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 24053580 - 24053540
Alignment:
| Q |
323 |
taaatagagttaaaacacagcctaaatccaatggttatggt |
363 |
Q |
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| T |
24053580 |
taaatagagttaaaacacaacctaaatccaatggttatggt |
24053540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 33168875 - 33168922
Alignment:
| Q |
46 |
cttaaatcatggcaagatgttaatgagctatgcacacaagtggtagag |
93 |
Q |
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|||||| ||||||| |||||||||||||||||| | |||||||||||| |
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| T |
33168875 |
cttaaaccatggcacgatgttaatgagctatgcgcgcaagtggtagag |
33168922 |
T |
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