View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2299_high_2 (Length: 352)

Name: NF2299_high_2
Description: NF2299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2299_high_2
NF2299_high_2
[»] chr1 (4 HSPs)
chr1 (148-309)||(2758230-2758392)
chr1 (17-85)||(2758098-2758166)
chr1 (214-290)||(28111538-28111614)
chr1 (214-290)||(16948930-16949006)
[»] chr7 (3 HSPs)
chr7 (214-309)||(25032758-25032852)
chr7 (214-252)||(3404070-3404108)
chr7 (148-179)||(25032925-25032956)
[»] chr5 (5 HSPs)
chr5 (219-309)||(36409756-36409845)
chr5 (214-289)||(25815279-25815354)
chr5 (214-265)||(10912158-10912209)
chr5 (214-290)||(21178372-21178451)
chr5 (214-264)||(11857393-11857443)
[»] chr8 (4 HSPs)
chr8 (214-275)||(29608676-29608737)
chr8 (214-290)||(34108872-34108946)
chr8 (234-284)||(3693445-3693495)
chr8 (214-257)||(32323410-32323453)
[»] chr4 (1 HSPs)
chr4 (214-279)||(36690296-36690361)
[»] chr3 (3 HSPs)
chr3 (214-290)||(11500540-11500615)
chr3 (214-290)||(36644724-36644799)
chr3 (215-290)||(22516775-22516850)
[»] chr2 (2 HSPs)
chr2 (215-290)||(15545133-15545208)
chr2 (219-271)||(11197458-11197510)


Alignment Details
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 148 - 309
Target Start/End: Original strand, 2758230 - 2758392
Alignment:
Q  148 ctgtgaactttatatgatattgtataatgaacnnnnnnn-gactcaatttacttagccgtgaacattcaatgaaaaataaagtaaaattttgtttgcaat 246  Q
    ||||||||||||||||||||||||||||||||        |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  2758230 ctgtgaactttatatgatattgtataatgaacttttttttgactcaatttacttagccttgaacattcaatgaaaaataaagtaaagttttgtttgcaat 2758329  T
Q  247 ttacaaaagaacattaattcttaacgaatatcaatttacgattcttatgttgtaatttcgtga 309  Q
    ||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||| ||||    
T  2758330 ttacaaaagaacattaattcttaacaaatatcaatttatgatttttatgttgtaattttgtga 2758392  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 2758098 - 2758166
Alignment:
Q  17 ttttattgaggtgaatgagagatataaaagattagagatggggaccaacagagaccatagtcctcccaa 85  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  2758098 ttttattgaggtgaatgagagatataaaagattagagatggggatcaacatagaccatagtcctcccaa 2758166  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 28111538 - 28111614
Alignment:
Q  214 caatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaacgaatatcaatttacgattc 290  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||  ||||||||||| |||||| |||||    
T  28111538 caatgaaaaataaagtaaagttttgtttgcaatttacaaaagaatattaatctttaacgaatattaatttatgattc 28111614  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 16948930 - 16949006
Alignment:
Q  214 caatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaacgaatatcaatttacgattc 290  Q
    ||||||||||| ||||||  |||||||| |||||||||||||||| ||||   |||||||||||||||||| |||||    
T  16948930 caatgaaaaattaagtaatgttttgtttccaatttacaaaagaactttaaacattaacgaatatcaatttatgattc 16949006  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 214 - 309
Target Start/End: Complemental strand, 25032852 - 25032758
Alignment:
Q  214 caatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaacgaatatcaatttacgattcttatgttgtaatttcgtga 309  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||| |||| ||||| | ||||| ||||||||||    
T  25032852 caatgaaaaataaagtaaacttttgtttgcaatttgcaaaagaacattaatccttaacgaatatcagtttatgattcct-tgttgcaatttcgtga 25032758  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 3404070 - 3404108
Alignment:
Q  214 caatgaaaaataaagtaaaattttgtttgcaatttacaa 252  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3404070 caatgaaaaataaagtaaaattttgtttgcaatttacaa 3404108  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 179
Target Start/End: Complemental strand, 25032956 - 25032925
Alignment:
Q  148 ctgtgaactttatatgatattgtataatgaac 179  Q
    ||||||||||||||||||||||||||||||||    
T  25032956 ctgtgaactttatatgatattgtataatgaac 25032925  T

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Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 219 - 309
Target Start/End: Original strand, 36409756 - 36409845
Alignment:
Q  219 aaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaacgaatatcaatttacgattcttatgttgtaatttcgtga 309  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| | ||||| ||||||||||    
T  36409756 aaaaataaagtaaagttttgtttgcaatttacaaaagaacattaatccttaacgaaaatcaatttatgattcct-tgttgcaatttcgtga 36409845  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 214 - 289
Target Start/End: Original strand, 25815279 - 25815354
Alignment:
Q  214 caatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaacgaatatcaatttacgatt 289  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| ||||    
T  25815279 caataaaaaataaagtaaaattttgtttgcactttacaaaagaacattaatccttaacgaatatccatttatgatt 25815354  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 10912158 - 10912209
Alignment:
Q  214 caatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaatt 265  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  10912158 caatgaaaaataaagtaaagttttgtttgcaatttacaaaagaatattaatt 10912209  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 21178372 - 21178451
Alignment:
Q  214 caatgaaaaataaagtaaaattttgtttgcaatt---tacaaaagaacattaattcttaacgaatatcaatttacgattc 290  Q
    ||||||||| ||||||||||||||||||||||||   |||||| ||| |||||| |||||||||||| || ||| |||||    
T  21178372 caatgaaaactaaagtaaaattttgtttgcaatttactacaaatgaatattaatccttaacgaatattaacttatgattc 21178451  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 264
Target Start/End: Original strand, 11857393 - 11857443
Alignment:
Q  214 caatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaat 264  Q
    ||||| ||||||||||||  ||||||||||||||||||||| || ||||||    
T  11857393 caatggaaaataaagtaacgttttgtttgcaatttacaaaaaaatattaat 11857443  T

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Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 29608737 - 29608676
Alignment:
Q  214 caatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaacgaat 275  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  29608737 caatgaaaaataaagtaaagttttgtttgcaatttacaaaagaacattaattctgaacgaat 29608676  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 34108946 - 34108872
Alignment:
Q  214 caatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaacgaatatcaatttacgattc 290  Q
    ||||||||||||||||||| |||||||||||||| |||||| |||| || | ||||| ||||||||||||| |||||    
T  34108946 caatgaaaaataaagtaaagttttgtttgcaattgacaaaa-aaca-tattccttaatgaatatcaatttatgattc 34108872  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 3693495 - 3693445
Alignment:
Q  234 ttttgtttgcaatttacaaaagaacattaattcttaacgaatatcaattta 284  Q
    |||| ||||||||||||||||||| |||||| |||||||||||| ||||||    
T  3693495 ttttatttgcaatttacaaaagaatattaatccttaacgaatattaattta 3693445  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 32323410 - 32323453
Alignment:
Q  214 caatgaaaaataaagtaaaattttgtttgcaatttacaaaagaa 257  Q
    ||||||||||| |||| ||||||||||||||||||||| |||||    
T  32323410 caatgaaaaattaagtgaaattttgtttgcaatttacataagaa 32323453  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 36690296 - 36690361
Alignment:
Q  214 caatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaacgaatatca 279  Q
    |||||| |||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||    
T  36690296 caatgagaaataaagtaaagttttgtttgaaatttacaaaagaacatcaattcttaacgaatatca 36690361  T

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Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 11500540 - 11500615
Alignment:
Q  214 caatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaacgaatatcaatttacgattc 290  Q
    ||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |||||| ||||||||||||| ||||    
T  11500540 caatgaaaaataaagtaaagttttgtt-gcaatttacaaaacaacattaatccttaacaaatatcaatttacaattc 11500615  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 36644799 - 36644724
Alignment:
Q  214 caatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaacgaatatcaatttacgattc 290  Q
    |||||||||||||| |||| |||||||||||||| || |||| |||||||| ||||| ||||||||||||| |||||    
T  36644799 caatgaaaaataaattaaagttttgtttgcaattgac-aaaggacattaatccttaatgaatatcaatttatgattc 36644724  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 290
Target Start/End: Complemental strand, 22516850 - 22516775
Alignment:
Q  215 aatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaacgaatatcaatttacgattc 290  Q
    |||||||||||||||||| ||||||||||||||  ||||| || ||||||  | ||||||||| |||||| |||||    
T  22516850 aatgaaaaataaagtaaatttttgtttgcaattatcaaaaaaatattaatcatcaacgaatattaatttatgattc 22516775  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 290
Target Start/End: Complemental strand, 15545208 - 15545133
Alignment:
Q  215 aatgaaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaacgaatatcaatttacgattc 290  Q
    |||||||||||||||||| ||||||||| || ||||||||||| |||||| || ||| ||||| |||||| |||||    
T  15545208 aatgaaaaataaagtaaagttttgtttgaaacttacaaaagaatattaatcctgaactaatattaatttatgattc 15545133  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 11197510 - 11197458
Alignment:
Q  219 aaaaataaagtaaaattttgtttgcaatttacaaaagaacattaattcttaac 271  Q
    ||||| |||||||  |||||||||||||||||||||||||  |||| ||||||    
T  11197510 aaaaagaaagtaaggttttgtttgcaatttacaaaagaactctaatccttaac 11197458  T

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