View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2299_high_3 (Length: 289)
Name: NF2299_high_3
Description: NF2299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2299_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 271
Target Start/End: Original strand, 30275541 - 30275789
Alignment:
| Q |
21 |
tgcaactcaagaggataagttcttaaaaataatttatgttcgttacaatttacaatctgctgtgtttagttattaagtagaaacgacgttcaacattaaa |
120 |
Q |
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| T |
30275541 |
tgcaacgcaagaggataagttcttaaaaataatttatgttcgttacaatttacaatctgctgtgtttagttattaagtagaaacgacgttcaacattaaa |
30275640 |
T |
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| Q |
121 |
ttatagtatcacattagagattagaccaacataaatgtggtgtatcaactgttaaatgcttcttttataaagctaaacagaaaatcaaaacacatcagta |
220 |
Q |
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| T |
30275641 |
ttatagtatcacaatagagattagaccaacataaatgtggtgtatcaactgttaaatgcttcttttataaagctaaacagaaaatcaaaacacatcagta |
30275740 |
T |
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| Q |
221 |
atgtttaataatgtatggtaattatgaacacacctgtaatagtgtcagaac |
271 |
Q |
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| T |
30275741 |
atgtttaataatgtatggtaat--tgaacacacctgtaatagtgtcagaac |
30275789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 271
Target Start/End: Original strand, 7778852 - 7779100
Alignment:
| Q |
21 |
tgcaactcaagaggataagttcttaaaaataatttatgttcgttacaatttacaatctgctgtgtttagttattaagtagaaacgacgttcaacattaaa |
120 |
Q |
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| T |
7778852 |
tgcaacgcaagagtataaggtcttaaaaataatttatgttagttacaatttacaatctgttgtgtttagttgttaagtagaaacaacgttcaacattaag |
7778951 |
T |
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| Q |
121 |
ttatagtatcacattagagattagaccaacataaatgtggtgtatcaactgttaaatgcttcttttataaagctaaacagaaaatcaaaacacatcagta |
220 |
Q |
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| T |
7778952 |
ttatagtatcagattagagattagaccgacataaatgcggtgtatcaactgttaaatgcttctttgataaagctaaacagaaaatcaaaacacatcagta |
7779051 |
T |
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| Q |
221 |
atgtttaataatgtatggtaattatgaacacacctgtaatagtgtcagaac |
271 |
Q |
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| T |
7779052 |
atgtttaataatatatggtaat--tgaacacacctgtaatagtgtcagaac |
7779100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 28843301 - 28843245
Alignment:
| Q |
160 |
gtgtatcaactgttaaatgcttcttttataaagctaaacagaaaatcaaaacacatc |
216 |
Q |
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| T |
28843301 |
gtgtatcaactgttaagtacctcttttataaatctaaacataatattaaaacacatc |
28843245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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