View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2299_high_4 (Length: 285)
Name: NF2299_high_4
Description: NF2299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2299_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 28506386 - 28506648
Alignment:
| Q |
19 |
gatatcactgagtaaccagtgatatttgcaaagcctattgaaagtgaacctcctgctagttccatctctccaagatatccaaggaaaatcattgatatca |
118 |
Q |
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| T |
28506386 |
gatatcactgagtaaccagtgatatttgcaaagcctattgaaagtgaacctcctgctagttccatctctccaagatatccaaggaaaatcattgatatca |
28506485 |
T |
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| Q |
119 |
tagctcttgaatataacaataaaccagttattgttgttggacctgatatttttcctatttctttgatttctgttatggcctgaaatgcataaagagaaat |
218 |
Q |
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| T |
28506486 |
tagctcttgaatataacaataaaccagttattgttgttggacctgatatttttcctatttctttgatttctgttatggcctgaaatgcataaagagaaat |
28506585 |
T |
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| Q |
219 |
agttatattataaactcaataatattagtagaattaatttagtacccttttttcatctcactc |
281 |
Q |
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| T |
28506586 |
agttatattataaactcaataatattagtagaattaatttagtacccttttttcatgtcactc |
28506648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 176
Target Start/End: Complemental strand, 51874434 - 51874289
Alignment:
| Q |
31 |
taaccagtgatatttgcaaagcctattgaaagtgaacctcctgctagttccatctctccaagatatccaaggaaaatcattgatatcatagctcttgaat |
130 |
Q |
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|||||||| || |||||||| ||||| || || ||||||||||||||||| |||| || ||||| |||||||||| ||| || |||||||||||||||| |
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| T |
51874434 |
taaccagttatgtttgcaaaacctatggagagagaacctcctgctagttctgtctcgccgagatagccaaggaaaagcatagagatcatagctcttgaat |
51874335 |
T |
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| Q |
131 |
ataacaataaaccagttattgttgttggacctgatatttttcctat |
176 |
Q |
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|||| | |||||||||||| | |||||||||||||||||| ||||| |
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| T |
51874334 |
ataagagtaaaccagttatagctgttggacctgatattttacctat |
51874289 |
T |
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