View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2299_low_7 (Length: 256)
Name: NF2299_low_7
Description: NF2299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2299_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 22 - 184
Target Start/End: Original strand, 27845303 - 27845465
Alignment:
| Q |
22 |
gtctaccaagagggacaaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttg-nnnnnnnnggaatcaag |
120 |
Q |
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| T |
27845303 |
gtctaccaagagggacaaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttgtttttttttggaatcaag |
27845402 |
T |
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| Q |
121 |
ggatatagctttattttaacctttgttaactagccatttgcaaatacttactttgactgtaatt |
184 |
Q |
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| T |
27845403 |
ggatatagctttattttaacctttgttaactagccatttgcaaatacttac-ttgactgtaatt |
27845465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 27845558 - 27845615
Alignment:
| Q |
199 |
ttttataaggatgaattatactagcattgagtaacaaagtatatatcatatatggctg |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27845558 |
ttttataaggatgaattatactagcattgagtaacaaagtatatatcatatatggctg |
27845615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 36 - 184
Target Start/End: Original strand, 20140192 - 20140343
Alignment:
| Q |
36 |
acaaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttgnnnnnnnngg---aatcaagggatatagcttt |
132 |
Q |
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| T |
20140192 |
acaaaagagacagttacttacacacagttttgttttgcagacaaaataagcatcaaaacttttgcttgttgttttttttttaatcaagggatatagcttt |
20140291 |
T |
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| Q |
133 |
attttaacctttgttaactagccatttgcaaatacttactttgactgtaatt |
184 |
Q |
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| T |
20140292 |
attttaaccattgttaactagccatttgcaaatacttactttgactgtaatt |
20140343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 36 - 184
Target Start/End: Complemental strand, 22192677 - 22192526
Alignment:
| Q |
36 |
acaaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttgnnnnnnnngg---aatcaagggatatagcttt |
132 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22192677 |
acaaaagagacagttacttacacacagttttgttttgcagacaaaataagcatcaaaacttttgcttgttgttttttttttaatcaagggatatagcttt |
22192578 |
T |
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| Q |
133 |
attttaacctttgttaactagccatttgcaaatacttactttgactgtaatt |
184 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22192577 |
attttaaccattgttaactagccatttgcaaatacttactttgactgtaatt |
22192526 |
T |
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