View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2299_low_9 (Length: 237)

Name: NF2299_low_9
Description: NF2299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2299_low_9
NF2299_low_9
[»] chr6 (3 HSPs)
chr6 (18-211)||(33213229-33213423)
chr6 (131-205)||(32107840-32107915)
chr6 (163-205)||(9727576-9727618)
[»] chr2 (15 HSPs)
chr2 (131-205)||(12541341-12541416)
chr2 (131-205)||(16534948-16535023)
chr2 (163-205)||(433219-433261)
chr2 (163-205)||(15488830-15488872)
chr2 (163-205)||(18999410-18999452)
chr2 (163-205)||(19967815-19967857)
chr2 (163-205)||(23497517-23497559)
chr2 (163-205)||(43461339-43461381)
chr2 (128-205)||(43841717-43841795)
chr2 (164-205)||(16010618-16010659)
chr2 (145-205)||(727294-727354)
chr2 (145-205)||(10392708-10392768)
chr2 (165-205)||(31054131-31054171)
chr2 (163-203)||(33898311-33898351)
chr2 (145-205)||(39310429-39310489)
[»] chr8 (11 HSPs)
chr8 (135-205)||(24241903-24241974)
chr8 (145-205)||(17919820-17919880)
chr8 (142-205)||(10286470-10286533)
chr8 (163-205)||(20662603-20662645)
chr8 (163-205)||(37295207-37295249)
chr8 (163-205)||(37817457-37817499)
chr8 (145-205)||(4312196-4312256)
chr8 (131-206)||(7772054-7772130)
chr8 (161-205)||(24655053-24655097)
chr8 (153-205)||(39334015-39334067)
chr8 (161-205)||(40772570-40772614)
[»] chr5 (13 HSPs)
chr5 (142-205)||(1277498-1277561)
chr5 (161-205)||(26310753-26310797)
chr5 (145-205)||(38975743-38975803)
chr5 (163-205)||(4444871-4444913)
chr5 (163-205)||(9053976-9054018)
chr5 (163-205)||(10393507-10393549)
chr5 (163-205)||(40596037-40596079)
chr5 (164-205)||(972599-972640)
chr5 (161-202)||(35232622-35232663)
chr5 (161-205)||(24638033-24638077)
chr5 (161-205)||(29806646-29806690)
chr5 (145-205)||(33617159-33617219)
chr5 (145-205)||(36034622-36034682)
[»] chr1 (13 HSPs)
chr1 (131-205)||(44623023-44623098)
chr1 (161-205)||(50145137-50145181)
chr1 (131-205)||(5598349-5598424)
chr1 (131-205)||(41445035-41445110)
chr1 (163-205)||(2112828-2112870)
chr1 (163-205)||(42630990-42631032)
chr1 (163-205)||(43086476-43086518)
chr1 (163-205)||(49948322-49948364)
chr1 (161-202)||(16939525-16939566)
chr1 (170-203)||(32210560-32210593)
chr1 (164-205)||(48731761-48731802)
chr1 (161-205)||(43676029-43676073)
chr1 (161-205)||(52492686-52492730)
[»] chr7 (10 HSPs)
chr7 (131-205)||(6071142-6071216)
chr7 (153-205)||(27339733-27339785)
chr7 (161-205)||(45594879-45594923)
chr7 (163-201)||(16862469-16862507)
chr7 (163-205)||(17895715-17895757)
chr7 (163-205)||(33512878-33512920)
chr7 (145-205)||(1869879-1869939)
chr7 (165-205)||(33906366-33906406)
chr7 (161-205)||(38261080-38261124)
chr7 (145-205)||(45946773-45946833)
[»] chr3 (12 HSPs)
chr3 (160-205)||(36540183-36540228)
chr3 (145-204)||(24273886-24273945)
chr3 (135-205)||(6083147-6083217)
chr3 (163-205)||(35359798-35359840)
chr3 (163-205)||(36518181-36518223)
chr3 (163-205)||(40559755-40559797)
chr3 (163-205)||(40639683-40639725)
chr3 (164-205)||(11056077-11056118)
chr3 (161-205)||(28731926-28731970)
chr3 (145-205)||(34481797-34481857)
chr3 (145-205)||(38485964-38486024)
chr3 (145-205)||(51402886-51402946)
[»] chr4 (7 HSPs)
chr4 (145-205)||(51675672-51675732)
chr4 (163-205)||(32233693-32233735)
chr4 (163-205)||(47462041-47462083)
chr4 (163-204)||(54096946-54096987)
chr4 (164-205)||(54864478-54864519)
chr4 (145-205)||(39997778-39997838)
chr4 (145-205)||(48628469-48628529)
[»] scaffold0057 (1 HSPs)
scaffold0057 (163-205)||(64364-64406)
[»] scaffold0014 (1 HSPs)
scaffold0014 (163-205)||(195822-195864)
[»] scaffold0364 (1 HSPs)
scaffold0364 (145-205)||(12041-12101)


Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 33213423 - 33213229
Alignment:
Q  18 gtagtattattggtttgtacatccctaactcattcatctttgtggattgtgtattttagccttaataaagaacaccacgtttggtctcatagctcaacta 117  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33213423 gtagtattattggtttgtatatccctaactcattcatctttgtggattgtgtattttagccttaataaagaacaccatgtttggtctcatagctcaacta 33213324  T
Q  118 aca-aaaatgacgaatgtcatgatcggattcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtctacttgtt 211  Q
    ||| ||||||| ||||||||||||||| |||||| || ||||| | || |||||||||| |||||||||||||||||||||||||||||||||||    
T  33213323 acaaaaaatgatgaatgtcatgatcgggttcgaattttggtatctccatttgagtgtgtaagtttatgatgtctttgtcatttcgtctacttgtt 33213229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 32107915 - 32107840
Alignment:
Q  131 atgtcatgatcgga-ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||||||||  |||||||  ||||| || |||||| |||||||||||||| ||| ||||| |||||||||||    
T  32107915 atgtcatgatcggggttcgaaccccggtacttccacttgtgtgtgtgagtttataatggctttgccatttcgtcta 32107840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 9727576 - 9727618
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  9727576 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 9727618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 12541416 - 12541341
Alignment:
Q  131 atgtcatgatcgga-ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||||||||  ||||||| ||||||  |||||||| |||||||||||||| ||| |||||||||||||||||    
T  12541416 atgtcatgatcggggttcgaacctcggtaccttcacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 12541341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 16535023 - 16534948
Alignment:
Q  131 atgtcatgatcgga-ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||||||||| |||||||  |||||  | |||||| |||||||||||||| ||  |||||||||||||||||    
T  16535023 atgtcatgatcggagttcgaaccccggtaactccacttgggtgtgtgagtttataatagctttgtcatttcgtcta 16534948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 433219 - 433261
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  433219 cacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 433261  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 15488830 - 15488872
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  15488830 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 15488872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 18999410 - 18999452
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  18999410 cacttgtgtgtgtgagtttattatgactttgtcatttcgtcta 18999452  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 19967815 - 19967857
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  19967815 cacttgcgtgtgtgagtttataatgactttgtcatttcgtcta 19967857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 23497559 - 23497517
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  23497559 cacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 23497517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 43461381 - 43461339
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  43461381 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 43461339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 43841795 - 43841717
Alignment:
Q  128 cgaatgtcatgatcgga-ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    ||||| ||||||||||| |||||||| || ||  | |||||| |||||||||||||| ||| |||| ||||||||||||    
T  43841795 cgaatatcatgatcggagttcgaactccgatacctccacttgtgtgtgtgagtttataatgactttctcatttcgtcta 43841717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 16010659 - 16010618
Alignment:
Q  164 acttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    ||||| |||||||||||||| ||| |||||||||||||||||    
T  16010659 acttgtgtgtgtgagtttataatggctttgtcatttcgtcta 16010618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 727354 - 727294
Alignment:
Q  145 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||| |||||  | |||||| |||||||||||||| ||| ||||| |||||||||||    
T  727354 ttcgaactccggtacctccacttgtgtgtgtgagtttataatggctttgccatttcgtcta 727294  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 10392708 - 10392768
Alignment:
Q  145 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||  |||||| | |||||| |||||||||||||| ||| ||||| |||||||||||    
T  10392708 ttcgaaccccggtatctccacttgtgtgtgtgagtttattatggctttgccatttcgtcta 10392768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 31054131 - 31054171
Alignment:
Q  165 cttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||| |||||||||||||| ||| |||||||||||||||||    
T  31054131 cttgtgtgtgtgagtttattatggctttgtcatttcgtcta 31054171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 33898311 - 33898351
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtc 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||    
T  33898311 cacttgtgtgtgtgagtttataatgactttgtcatttcgtc 33898351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 39310429 - 39310489
Alignment:
Q  145 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||| |||||  | |||||| |||||||||||||| ||  |||||||||||||||||    
T  39310429 ttcgaactccggtaactccacttgtgtgtgtgagtttataatagctttgtcatttcgtcta 39310489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 24241974 - 24241903
Alignment:
Q  135 catgatcgga-ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||||| |||||||| |||||| | |||||| |||||||| ||||| ||| |||||||||||||||||    
T  24241974 catgatcggagttcgaactccggtatctccacttgtgtgtgtgaatttataatgactttgtcatttcgtcta 24241903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 17919880 - 17919820
Alignment:
Q  145 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    ||||||| ||||||  | |||||| |||||||||||||| ||| |||||||||||||||||    
T  17919880 ttcgaacctcggtacctccacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 17919820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 10286533 - 10286470
Alignment:
Q  142 ggattcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    ||||||||||  |||||| | ||||||  ||||||||||||| ||| |||||||||||||||||    
T  10286533 ggattcgaaccccggtatctccacttgtatgtgtgagtttataatgactttgtcatttcgtcta 10286470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 20662603 - 20662645
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  20662603 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 20662645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 37295207 - 37295249
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  37295207 cacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 37295249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 37817457 - 37817499
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  37817457 cacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 37817499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 4312196 - 4312256
Alignment:
Q  145 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||| |||||  | |||||| |||||||||||||| ||| ||||| |||||||||||    
T  4312196 ttcgaactccggtacctccacttgtgtgtgtgagtttataatggctttgccatttcgtcta 4312256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 7772130 - 7772054
Alignment:
Q  131 atgtcatgatcgga-ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtctac 206  Q
    |||||||||||||  |||||||  |||||  | |||||| |||||||||||||| ||| ||||| ||||||||||||    
T  7772130 atgtcatgatcggggttcgaaccccggtacctccacttgtgtgtgtgagtttataatgactttgccatttcgtctac 7772054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 24655053 - 24655097
Alignment:
Q  161 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||| |||||||||||||| ||| ||||| |||||||||||    
T  24655053 ttcacttgtgtgtgtgagtttataatggctttgccatttcgtcta 24655097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 39334015 - 39334067
Alignment:
Q  153 tcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||||||||||  |||| ||||||||| |||  ||||||||||||||||    
T  39334015 tcggtattttcacttatgtgtttgagtttataatggttttgtcatttcgtcta 39334067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 40772614 - 40772570
Alignment:
Q  161 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||| |||||||||||||| ||| ||||| |||||||||||    
T  40772614 ttcacttgtgtgtgtgagtttataatggctttgccatttcgtcta 40772570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 1277498 - 1277561
Alignment:
Q  142 ggattcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||||| ||||||  | |||||| |||||||||||||| ||| |||||||||||||||||    
T  1277498 ggattcgaacctcggtacctccacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 1277561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 26310797 - 26310753
Alignment:
Q  161 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||| |||||||||||||| ||| |||||||||||||||||    
T  26310797 ttcacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 26310753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 38975803 - 38975743
Alignment:
Q  145 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||| |||||  | |||||| |||||||||||||| ||| |||||||||||||||||    
T  38975803 ttcgaactccggtacctccacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 38975743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 4444913 - 4444871
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  4444913 cacttgtgtgtgtgagtttataatgcctttgtcatttcgtcta 4444871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 9054018 - 9053976
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  9054018 cacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 9053976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 10393549 - 10393507
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  10393549 cacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 10393507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 40596037 - 40596079
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  40596037 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 40596079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 972640 - 972599
Alignment:
Q  164 acttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    ||||| |||||||||||||| ||| |||||||||||||||||    
T  972640 acttgtgtgtgtgagtttataatgactttgtcatttcgtcta 972599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 35232622 - 35232663
Alignment:
Q  161 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgt 202  Q
    |||||||| |||||||||||||| ||| ||||||||||||||    
T  35232622 ttcacttgtgtgtgtgagtttataatgactttgtcatttcgt 35232663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 24638033 - 24638077
Alignment:
Q  161 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||| |||||||||||||| ||| |||| ||||||||||||    
T  24638033 ttcacttgtgtgtgtgagtttataatgactttatcatttcgtcta 24638077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 29806646 - 29806690
Alignment:
Q  161 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||| |||||||||||||| ||| ||||| |||||||||||    
T  29806646 ttcacttgtgtgtgtgagtttataatggctttgccatttcgtcta 29806690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 33617159 - 33617219
Alignment:
Q  145 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||  |||||| | |||||| |||||||||||||| ||| ||||| |||||||||||    
T  33617159 ttcgaaccccggtatctccacttgtgtgtgtgagtttattatggctttgccatttcgtcta 33617219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 36034682 - 36034622
Alignment:
Q  145 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| ||| ||| ||||||||| |||||||||||||| ||| ||||  |||||||||||    
T  36034682 ttcgaatttcagtactttcacttgtgtgtgtgagtttataatgactttaccatttcgtcta 36034622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 44623098 - 44623023
Alignment:
Q  131 atgtcatgatcgga-ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||||||||  |||||||||||||| || |||||  || ||||||||||| ||| |||||||||||||||||    
T  44623098 atgtcatgatcggggttcgaacttcggtacttccacttatgtatgtgagtttataatggctttgtcatttcgtcta 44623023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 50145181 - 50145137
Alignment:
Q  161 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||| |||||||||||||| ||| |||||||||||||||||    
T  50145181 ttcacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 50145137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 5598349 - 5598424
Alignment:
Q  131 atgtcatgatcgga-ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    ||||||||| |||| |||||||  |||||  | |||||| |||||||||||||| ||| |||||||||||||||||    
T  5598349 atgtcatgaccggagttcgaaccccggtacctccacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 5598424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 41445110 - 41445035
Alignment:
Q  131 atgtcatgatcgga-ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||||||||| |||||||  |||||  | |||||| |||||||||||||| ||| ||||| |||||||||||    
T  41445110 atgtcatgatcggagttcgaaccccggtacctccacttgtgtgtgtgagtttattatggctttgccatttcgtcta 41445035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 2112828 - 2112870
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  2112828 cacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 2112870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 42631032 - 42630990
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  42631032 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 42630990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 43086518 - 43086476
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  43086518 cacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 43086476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 49948322 - 49948364
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  49948322 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 49948364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 16939525 - 16939566
Alignment:
Q  161 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgt 202  Q
    |||||||  |||||||||||||||||| ||||||||||||||    
T  16939525 ttcacttatgtgtgtgagtttatgatgcctttgtcatttcgt 16939566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 32210593 - 32210560
Alignment:
Q  170 gtgtgtgagtttatgatgtctttgtcatttcgtc 203  Q
    ||||||||||||||||||||||| ||||||||||    
T  32210593 gtgtgtgagtttatgatgtctttatcatttcgtc 32210560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 48731802 - 48731761
Alignment:
Q  164 acttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    ||||| |||||||||||||| ||| |||||||||||||||||    
T  48731802 acttgtgtgtgtgagtttataatggctttgtcatttcgtcta 48731761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 43676073 - 43676029
Alignment:
Q  161 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||| |||||||||||||| ||| ||||| |||||||||||    
T  43676073 ttcacttgtgtgtgtgagtttataatggctttgccatttcgtcta 43676029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 52492730 - 52492686
Alignment:
Q  161 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||| |||||||||||||| ||| |||| ||||||||||||    
T  52492730 ttcacttgtgtgtgtgagtttataatgactttatcatttcgtcta 52492686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 6071216 - 6071142
Alignment:
Q  131 atgtcatgatcggattcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||| |||||||| |||||||| |||||| |||||||| |||||||| ||||  |||  ||||||||||||||||    
T  6071216 atgttatgatcgggttcgaactccggtatcttcacttgtgtgtgtgaatttaaaatgattttgtcatttcgtcta 6071142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 27339785 - 27339733
Alignment:
Q  153 tcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    ||||||| | |||||| |||||||||||||| ||| |||||||||||||||||    
T  27339785 tcggtatctccacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 27339733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 45594879 - 45594923
Alignment:
Q  161 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||| |||||||||||||| ||| |||||||||||||||||    
T  45594879 ttcacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 45594923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 16862469 - 16862507
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcg 201  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  16862469 cacttgtgtgtgtgagtttatgatgactttgtcatttcg 16862507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 17895715 - 17895757
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  17895715 cacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 17895757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 33512878 - 33512920
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  33512878 cacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 33512920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 1869879 - 1869939
Alignment:
Q  145 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||| |||||  | |||||| |||||||||||||| ||| ||||| |||||||||||    
T  1869879 ttcgaactccggtacctccacttgtgtgtgtgagtttataatggctttgccatttcgtcta 1869939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 33906366 - 33906406
Alignment:
Q  165 cttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||| |||||||||||||| ||| |||||||||||||||||    
T  33906366 cttgtgtgtgtgagtttataatggctttgtcatttcgtcta 33906406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 38261080 - 38261124
Alignment:
Q  161 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||  |||||||||||||| ||| |||||||||||||||||    
T  38261080 ttcacttatgtgtgtgagtttataatgactttgtcatttcgtcta 38261124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 45946773 - 45946833
Alignment:
Q  145 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    ||||||| ||||||  | |||||| |||||||||||||  ||| |||||||||||||||||    
T  45946773 ttcgaacctcggtacctccacttgtgtgtgtgagtttacaatggctttgtcatttcgtcta 45946833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 36540183 - 36540228
Alignment:
Q  160 tttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    ||||||||| |||||||||||||| ||| |||||||||||||||||    
T  36540183 tttcacttgcgtgtgtgagtttataatgactttgtcatttcgtcta 36540228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 24273945 - 24273886
Alignment:
Q  145 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtct 204  Q
    ||||||||||||||  | |||||| |||||||||||||| ||| ||||| ||||||||||    
T  24273945 ttcgaacttcggtacctccacttgtgtgtgtgagtttataatggctttgccatttcgtct 24273886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 6083217 - 6083147
Alignment:
Q  135 catgatcggattcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    ||||| ||| |||||||| |||||  | |||||| |||||||||||||| |||  ||||||||||||||||    
T  6083217 catgaccgggttcgaactccggtacctccacttgtgtgtgtgagtttataatggttttgtcatttcgtcta 6083147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 35359798 - 35359840
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  35359798 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 35359840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 36518181 - 36518223
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  36518181 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 36518223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 40559755 - 40559797
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  40559755 cacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 40559797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 40639683 - 40639725
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  40639683 cacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 40639725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 11056118 - 11056077
Alignment:
Q  164 acttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    ||||| |||||||||||||| ||| |||||||||||||||||    
T  11056118 acttgtgtgtgtgagtttataatggctttgtcatttcgtcta 11056077  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 28731926 - 28731970
Alignment:
Q  161 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||| |||||||||||||  ||| |||||||||||||||||    
T  28731926 ttcacttgtgtgtgtgagtttacaatgactttgtcatttcgtcta 28731970  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 34481857 - 34481797
Alignment:
Q  145 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    ||||||||||||||  |  ||||| |||||||||||||| ||| ||||| |||||||||||    
T  34481857 ttcgaacttcggtacctctacttgtgtgtgtgagtttataatggctttgccatttcgtcta 34481797  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 38486024 - 38485964
Alignment:
Q  145 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||| |||||  | |||||| |||||||||||||| ||| ||||| |||||||||||    
T  38486024 ttcgaactccggtacctccacttgtgtgtgtgagtttataatggctttgccatttcgtcta 38485964  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 51402886 - 51402946
Alignment:
Q  145 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||| |||||  | |||||| |||||||||||||| |||  ||||||||||||||||    
T  51402886 ttcgaactccggtacctccacttgtgtgtgtgagtttataatggttttgtcatttcgtcta 51402946  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 51675732 - 51675672
Alignment:
Q  145 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||| |||||  | |||||| |||||||||||||| ||| |||||||||||||||||    
T  51675732 ttcgaactccggtacctccacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 51675672  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 32233693 - 32233735
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  32233693 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 32233735  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 47462083 - 47462041
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  47462083 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 47462041  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 54096987 - 54096946
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtct 204  Q
    |||||| |||||||||||||| ||| ||||||||||||||||    
T  54096987 cacttgtgtgtgtgagtttataatgactttgtcatttcgtct 54096946  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 54864478 - 54864519
Alignment:
Q  164 acttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    ||||| |||||||||||||| ||| |||||||||||||||||    
T  54864478 acttgtgtgtgtgagtttataatgactttgtcatttcgtcta 54864519  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 39997838 - 39997778
Alignment:
Q  145 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    ||||||| ||||||  | |||||| |||||||||||||| ||| ||||| |||||||||||    
T  39997838 ttcgaacctcggtacctccacttgtgtgtgtgagtttataatgactttgccatttcgtcta 39997778  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 48628529 - 48628469
Alignment:
Q  145 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||||  |||||| |||| ||| |||||||||||||| ||| ||||| |||||||||||    
T  48628529 ttcgaaccccggtatcttcatttgtgtgtgtgagtttataatggctttgccatttcgtcta 48628469  T

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Target: scaffold0057 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 64364 - 64406
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  64364 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 64406  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 195822 - 195864
Alignment:
Q  163 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  195822 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 195864  T

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Target: scaffold0364 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 12041 - 12101
Alignment:
Q  145 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 205  Q
    ||||||| ||||||  |||||||| |||||||||||||| ||| ||||| | |||||||||    
T  12041 ttcgaacctcggtaccttcacttgtgtgtgtgagtttataatggctttgccttttcgtcta 12101  T

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