View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2300_high_4 (Length: 220)

Name: NF2300_high_4
Description: NF2300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2300_high_4
NF2300_high_4
[»] chr1 (3 HSPs)
chr1 (20-208)||(40795658-40795846)
chr1 (20-207)||(41670290-41670477)
chr1 (38-108)||(29391455-29391525)
[»] chr4 (11 HSPs)
chr4 (19-126)||(34662241-34662348)
chr4 (19-126)||(26433995-26434102)
chr4 (19-129)||(23402042-23402152)
chr4 (19-126)||(23885798-23885905)
chr4 (19-126)||(26435775-26435882)
chr4 (19-126)||(26832706-26832813)
chr4 (20-129)||(23868700-23868809)
chr4 (19-123)||(23415909-23416013)
chr4 (19-126)||(23453572-23453679)
chr4 (19-129)||(23408740-23408850)
chr4 (20-126)||(24307194-24307300)
[»] chr7 (1 HSPs)
chr7 (20-130)||(40180471-40180581)
[»] chr8 (1 HSPs)
chr8 (20-121)||(29684676-29684777)


Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 40795846 - 40795658
Alignment:
Q  20 cccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttt 119  Q
    |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40795846 cccatagccttgctggagattccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttt 40795747  T
Q  120 tcttcttgtcggcagaggaagcttcctttgggatcttcttctccgctttggttttctctgcgggagctttttctgctggcttcatctca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40795746 tcttcttgtcggcagaggaagcttcctttgggatcttcttctccgctttggttttctctgcgggagctttttctgctggcttcttctca 40795658  T

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Target: chr1; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 41670477 - 41670290
Alignment:
Q  20 cccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttt 119  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  41670477 cccatagccttgcttgagataccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttcaacgctcttcttgtttctcttct 41670378  T
Q  120 tcttcttgtcggcagaggaagcttcctttgggatcttcttctccgctttggttttctctgcgggagctttttctgctggcttcatctc 207  Q
    ||||||||||||  ||||| |||||||||||||||||||| || ||||||||||||||||| || || || |||||||||||| ||||    
T  41670377 tcttcttgtcggtggaggatgcttcctttgggatcttcttttcggctttggttttctctgctggcgccttctctgctggcttcttctc 41670290  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 29391525 - 29391455
Alignment:
Q  38 ataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttctt 108  Q
    ||||| || |||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||    
T  29391525 atacctatatcaggatgaacctgtttgagaaccttgaagatgtaaatcttataggtttcaacgctcttctt 29391455  T

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Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 34662241 - 34662348
Alignment:
Q  19 acccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctcttt 118  Q
    |||||| || |||||||||||||| |||||||| ||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  34662241 acccatggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttcaacgctcttcttgtttctcttc 34662340  T
Q  119 ttcttctt 126  Q
    ||||||||    
T  34662341 ttcttctt 34662348  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 26434102 - 26433995
Alignment:
Q  19 acccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctcttt 118  Q
    |||||| || |||||||||||||| ||||| |||||||| || || |||||||||||||||||||||||||| ||||| |||||||||||| |||||||     
T  26434102 acccatggctttgcttgagataccaatgtctggatgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttc 26434003  T
Q  119 ttcttctt 126  Q
    ||||||||    
T  26434002 ttcttctt 26433995  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 23402152 - 23402042
Alignment:
Q  19 acccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctcttt 118  Q
    |||||| ||||||||||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||||| ||||||||  |||||||  |||||||     
T  23402152 acccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttctacattcttcttacttctcttc 23402053  T
Q  119 ttcttcttgtc 129  Q
    |||||||||||    
T  23402052 ttcttcttgtc 23402042  T

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Target: chr4; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 23885905 - 23885798
Alignment:
Q  19 acccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctcttt 118  Q
    |||||| ||||||||||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||||| ||||| ||  |||||||| |||||||     
T  23885905 acccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttc 23885806  T
Q  119 ttcttctt 126  Q
    ||||||||    
T  23885805 ttcttctt 23885798  T

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Target: chr4; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 26435882 - 26435775
Alignment:
Q  19 acccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctcttt 118  Q
    |||||| || |||||||||||||| ||||| || ||||| || || |||||||||||||||||||||||||| ||||| |||||||||||| |||||||     
T  26435882 acccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttc 26435783  T
Q  119 ttcttctt 126  Q
    ||||||||    
T  26435782 ttcttctt 26435775  T

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Target: chr4; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 26832813 - 26832706
Alignment:
Q  19 acccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctcttt 118  Q
    |||||| || |||||||||||||| ||||| || ||||| || || |||||||||||||||||||||||||| ||||| |||||||||||| |||||||     
T  26832813 acccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttc 26832714  T
Q  119 ttcttctt 126  Q
    ||||||||    
T  26832713 ttcttctt 26832706  T

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Target: chr4; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 23868809 - 23868700
Alignment:
Q  20 cccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttt 119  Q
    ||||| || |||||||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||||| ||||| ||  |||||||| ||||||| |    
T  23868809 cccatggctttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttct 23868710  T
Q  120 tcttcttgtc 129  Q
    ||||||||||    
T  23868709 tcttcttgtc 23868700  T

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Target: chr4; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 23415909 - 23416013
Alignment:
Q  19 acccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctcttt 118  Q
    |||||| ||||||||||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||||| ||||| ||  |||||||| |||||||     
T  23415909 acccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttc 23416008  T
Q  119 ttctt 123  Q
    |||||    
T  23416009 ttctt 23416013  T

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Target: chr4; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 23453572 - 23453679
Alignment:
Q  19 acccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctcttt 118  Q
    |||||| ||||||||||||||||| ||||| || ||||| || || ||||| |||||||||||||||||||| ||||||||  |||||||| |||||||     
T  23453572 acccatggccttgcttgagataccaatgtctgggtgaacatgattcagaactttgaagatgtagatcttgtatgtttctacattcttcttgcttctcttc 23453671  T
Q  119 ttcttctt 126  Q
    ||||||||    
T  23453672 ttcttctt 23453679  T

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Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 23408740 - 23408850
Alignment:
Q  19 acccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctcttt 118  Q
    |||||| || |||||||||||||| ||||| || ||||| || || ||||| |||||||||||||||||||| ||||||||  |||||||  |||||||     
T  23408740 acccatcgctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaagatgtagatcttgtatgtttctacattcttcttacttctcttc 23408839  T
Q  119 ttcttcttgtc 129  Q
    |||||||||||    
T  23408840 ttcttcttgtc 23408850  T

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Target: chr4; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 24307300 - 24307194
Alignment:
Q  20 cccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttt 119  Q
    ||||| || |||||||||||||| ||||| || ||||| || || |||||||||||||| ||||||||||| ||||| ||  |||||||| ||||||| |    
T  24307300 cccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatatagatcttgtatgtttcaacattcttcttgcttctcttct 24307201  T
Q  120 tcttctt 126  Q
    |||||||    
T  24307200 tcttctt 24307194  T

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Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 40180471 - 40180581
Alignment:
Q  20 cccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttt 119  Q
    ||||||||||||||||| | |||||| |||||||||||||| || ||||||||||||||||| |||||||||||||| ||||| |||||  ||||||| |    
T  40180471 cccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaaccttgaagatgtatatcttgtaggtttcaacgcttttcttcgttctcttct 40180570  T
Q  120 tcttcttgtcg 130  Q
    |||||||||||    
T  40180571 tcttcttgtcg 40180581  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 29684777 - 29684676
Alignment:
Q  20 cccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttt 119  Q
    |||||||| || ||||| | ||| ||| |||||||||| || |||||||||||||| || || |||||||||||||| | ||| |||||   ||||||||    
T  29684777 cccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaaccttgaatatatatatcttgtaggtttcaatgcttttctttgatctctttt 29684678  T
Q  120 tc 121  Q
    ||    
T  29684677 tc 29684676  T

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