View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2300_high_7 (Length: 203)

Name: NF2300_high_7
Description: NF2300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2300_high_7
NF2300_high_7
[»] chr1 (3 HSPs)
chr1 (110-203)||(40795594-40795687)
chr1 (11-73)||(40795494-40795556)
chr1 (133-191)||(41670248-41670306)
[»] chr4 (8 HSPs)
chr4 (142-188)||(23416114-23416160)
chr4 (142-188)||(23885651-23885697)
chr4 (142-191)||(23868556-23868605)
chr4 (142-182)||(23401898-23401938)
chr4 (142-182)||(23408954-23408994)
chr4 (142-191)||(24307047-24307096)
chr4 (142-191)||(26433848-26433897)
chr4 (142-182)||(23453786-23453826)
[»] chr2 (1 HSPs)
chr2 (145-191)||(14715342-14715388)
[»] chr7 (1 HSPs)
chr7 (152-200)||(40180633-40180681)


Alignment Details
Target: chr1 (Bit Score: 94; Significance: 4e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 40795594 - 40795687
Alignment:
Q  110 gttttcaatttcagcttttcagctttcgatcatcaatggcaccaaagggagagaagaagcccgctgagaagaagccagcagaaaaagctcccgc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40795594 gttttcaatttcagcttttcagctttcgatcatcaatggcaccaaagggagagaagaagcccgctgagaagaagccagcagaaaaagctcccgc 40795687  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 40795494 - 40795556
Alignment:
Q  11 cagagaccattaaccatttctatataaaccattccacacccaaatgcaaaatcacaatttaaa 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40795494 cagagaccattaaccatttctatataaaccattccacacccaaatgcaaaatcacaatttaaa 40795556  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 41670248 - 41670306
Alignment:
Q  133 tttcgatcatcaatggcaccaaagggagagaagaagcccgctgagaagaagccagcaga 191  Q
    ||||| ||| ||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  41670248 tttcgttcaacaatggcaccaaagggagagaagaaacccgccgagaagaagccagcaga 41670306  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 23416160 - 23416114
Alignment:
Q  142 tcaatggcaccaaagggagagaagaagcccgctgagaagaagccagc 188  Q
    ||||||||||||||||||||||||||||| || |||||||| |||||    
T  23416160 tcaatggcaccaaagggagagaagaagccagcggagaagaaaccagc 23416114  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 23885651 - 23885697
Alignment:
Q  142 tcaatggcaccaaagggagagaagaagcccgctgagaagaagccagc 188  Q
    ||||||||||||||||||||||||||||| || |||||||| |||||    
T  23885651 tcaatggcaccaaagggagagaagaagccagcagagaagaaaccagc 23885697  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 23868556 - 23868605
Alignment:
Q  142 tcaatggcaccaaagggagagaagaagcccgctgagaagaagccagcaga 191  Q
    ||||||||||||||||||||||||||||| || |||||||| || |||||    
T  23868556 tcaatggcaccaaagggagagaagaagccagcggagaagaaacccgcaga 23868605  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 23401898 - 23401938
Alignment:
Q  142 tcaatggcaccaaagggagagaagaagcccgctgagaagaa 182  Q
    ||||||||||||||||||||||||||||| || ||||||||    
T  23401898 tcaatggcaccaaagggagagaagaagccagcggagaagaa 23401938  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 23408994 - 23408954
Alignment:
Q  142 tcaatggcaccaaagggagagaagaagcccgctgagaagaa 182  Q
    ||||||||||||||||||||||||||||| || ||||||||    
T  23408994 tcaatggcaccaaagggagagaagaagccagcggagaagaa 23408954  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 24307047 - 24307096
Alignment:
Q  142 tcaatggcaccaaagggagagaagaagcccgctgagaagaagccagcaga 191  Q
    |||||||| |||||||||||||||||||| || |||||||| || |||||    
T  24307047 tcaatggcgccaaagggagagaagaagccagcagagaagaaacccgcaga 24307096  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 26433848 - 26433897
Alignment:
Q  142 tcaatggcaccaaagggagagaagaagcccgctgagaagaagccagcaga 191  Q
    |||||||| ||||| |||||||||||||| || |||||||| ||||||||    
T  26433848 tcaatggcgccaaaaggagagaagaagccagcagagaagaaaccagcaga 26433897  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 23453826 - 23453786
Alignment:
Q  142 tcaatggcaccaaagggagagaagaagcccgctgagaagaa 182  Q
    |||||||| |||||||||||||||||||| || ||||||||    
T  23453826 tcaatggcgccaaagggagagaagaagccagcggagaagaa 23453786  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 14715342 - 14715388
Alignment:
Q  145 atggcaccaaagggagagaagaagcccgctgagaagaagccagcaga 191  Q
    |||||||||||| ||||||||||||| ||||||||||| || |||||    
T  14715342 atggcaccaaagtgagagaagaagccagctgagaagaaacccgcaga 14715388  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 40180681 - 40180633
Alignment:
Q  152 caaagggagagaagaagcccgctgagaagaagccagcagaaaaagctcc 200  Q
    |||||| ||||||||| ||||| ||||||||||| ||||| ||||||||    
T  40180681 caaaggcagagaagaaacccgcggagaagaagcccgcagagaaagctcc 40180633  T

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