View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2300_low_3 (Length: 269)
Name: NF2300_low_3
Description: NF2300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2300_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 573788 - 573537
Alignment:
| Q |
1 |
ctagatttccataacctgagactattttatttgaatccaatagcaattttatcaacttcaataaaaaatcatagaaacaaagatgaagaacaaagggttt |
100 |
Q |
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| T |
573788 |
ctagatttccataacctaagactattttatttgaatccaatagcaattttatcaacttcaataaaaaatcatagaaacaaagatgaagaacaaagagttt |
573689 |
T |
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| Q |
101 |
tcagatttccataacctgaaactattttatctgtggtatgtggaactttcttgnnnnnnnnnnnnnnnnaaagaaattaaattaacaatgaaaagtacaa |
200 |
Q |
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| T |
573688 |
tcagatttccataacctaaaactattttatctgtggtatgtggaactttcttgttttttattttattttaaagaaattaaattaacaatgaaaagtacaa |
573589 |
T |
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| Q |
201 |
acaagggaagaagtagaatttgggacagtgaagttgttgctcatggaggtga |
252 |
Q |
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| T |
573588 |
acaagggaagaagtagaatttgggacagttgagttgttgctcatggaggtga |
573537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 573816 - 573759
Alignment:
| Q |
73 |
agaaacaaagatgaagaacaaagggttttcagatttccataacctgaaactattttat |
130 |
Q |
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| T |
573816 |
agaaacaaagatgaagaacaaagggtttctagatttccataacctaagactattttat |
573759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 49244803 - 49244721
Alignment:
| Q |
170 |
aaagaaattaaattaacaatgaaaagtacaaacaagggaagaagtagaatttgggacagtgaagttgttgctcatggaggtga |
252 |
Q |
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| T |
49244803 |
aaagaaattaaattaacaatgaaaagtacaaacaagggaagaaatagaatttgggaccgtggagttgttgctcatggaggtga |
49244721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 49244884 - 49244831
Alignment:
| Q |
73 |
agaaacaaagatgaagaacaaagggttttcagatttccataacctgaaactatt |
126 |
Q |
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| T |
49244884 |
agaaacaaagatgaagaacaaagggtttccagatttccataacctaagactatt |
49244831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 14488177 - 14488121
Alignment:
| Q |
170 |
aaagaaattaaattaacaatgaaaa-gtacaaacaagggaagaagtagaatttggga |
225 |
Q |
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| T |
14488177 |
aaagaaattaaattaacaatgaaaaagtacaaacaagggaagaaggagaattcggga |
14488121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 14488321 - 14488269
Alignment:
| Q |
61 |
ataaaaaatcatagaaacaaagatgaagaacaaagggttttcagatttccata |
113 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
14488321 |
ataaaaaatcatagaaacaaagatgaagaacaaaggttttctagatttccata |
14488269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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