View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2300_low_4 (Length: 240)
Name: NF2300_low_4
Description: NF2300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2300_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 3268728 - 3268934
Alignment:
| Q |
1 |
atattctaagaatgaacaatggtgttctgttcgtgatgaaagatggtctacgtggttaacatctaaaactatgggacttgtttctaggtcttaatgagtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3268728 |
atattctaagaatgaacaatggtgttctgttcgtgatgaaagatggcctacgtggttaacatctaaaactatgg-acttgtttctaggtcttaatgagtg |
3268826 |
T |
|
| Q |
101 |
tgagatacatatttagctttatagcgggaatctgtcatcatagcttcaaggggaacgtgttcaagtattttacgtaattaggaaacagtcatgtgttagc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3268827 |
tgagatacatatttagctttatagcgggaatctgtcatcatagcttcaaggtgaacgtgttcaagtattttacgtaattaggaaacagtcatgtgttagc |
3268926 |
T |
|
| Q |
201 |
tttaaatt |
208 |
Q |
| |
|
|||||||| |
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| T |
3268927 |
tttaaatt |
3268934 |
T |
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