View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2300_low_7 (Length: 217)

Name: NF2300_low_7
Description: NF2300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2300_low_7
NF2300_low_7
[»] chr2 (2 HSPs)
chr2 (1-200)||(18253632-18253827)
chr2 (40-200)||(34661501-34661670)
[»] chr3 (4 HSPs)
chr3 (40-200)||(1344395-1344564)
chr3 (40-200)||(31136450-31136619)
chr3 (41-200)||(7578235-7578403)
chr3 (40-200)||(9701131-9701300)
[»] chr8 (2 HSPs)
chr8 (43-200)||(14722993-14723159)
chr8 (41-200)||(12218812-12218981)
[»] chr6 (1 HSPs)
chr6 (40-200)||(7705427-7705596)
[»] chr1 (1 HSPs)
chr1 (40-200)||(48920580-48920749)
[»] chr4 (2 HSPs)
chr4 (40-200)||(55468544-55468713)
chr4 (118-200)||(27189694-27189776)


Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 18253632 - 18253827
Alignment:
Q  1 ttctgaagattccattgatgtgagcaatctcaatagcagttccaaccaaaagtttgagaaaccattgacgtgagcaatctcaatagcagtcatagcagtt 100  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||    
T  18253632 ttctgaagattccattgatgtgagcaatctcaatag---ttccaaccaaaagtttgagaaaccattgatgtgagcaatctcaatagcag-catagtagtt 18253727  T
Q  101 actaattcagcatataactcccccagatactaggtaaaacatctaatacatatgctatcagagtttctgaagattcctcatgcagctactctattagggt 200  Q
    ||||||||| ||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18253728 actaattcaacatataactcccccaaatactaagtaaaacatctaatacacatgctatcagagtttctgaagattcctcatgcagctgctctattagggt 18253827  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 200
Target Start/End: Complemental strand, 34661670 - 34661501
Alignment:
Q  40 ttccaaccaaaagtttgagaaaccattgacgtgagcaatctcaatagcagtcatagcagttactaattcagcatata---------actcccccagatac 130  Q
    |||||||||||| ||||||||||||| || |||||| |||||||||||||||||||||| ||||| ||| |||||||          |||||||||||||    
T  34661670 ttccaaccaaaaatttgagaaaccatcgatgtgagctatctcaatagcagtcatagcagctactagttcggcatatagtgcactatgctcccccagatac 34661571  T
Q  131 taggtaaaacatctaatacatatgctatcagagtttctgaagattcctcatgcagctactctattagggt 200  Q
    |  ||||| |||| || ||||| ||||||||| |||||||||||||||| ||||||| ||||||||||||    
T  34661570 tgagtaaagcatccaacacataagctatcagaatttctgaagattcctcctgcagctgctctattagggt 34661501  T

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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 40 - 200
Target Start/End: Original strand, 1344395 - 1344564
Alignment:
Q  40 ttccaaccaaaagtttgagaaaccattgacgtgagcaatctcaatagcagtcatagcagttactaattcagcatata---------actcccccagatac 130  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||          ||||||||||||     
T  1344395 ttccaaccaaaaatttgagaaaccattgatgtgagcaatctcaatagccgtcatagcagctactaattcagcatatagtgcatttttctcccccagatat 1344494  T
Q  131 taggtaaaacatctaatacatatgctatcagagtttctgaagattcctcatgcagctactctattagggt 200  Q
    |  ||||| |||| |||||||| ||||||| |||||||||||||||||| | ||||| ||||||||||||    
T  1344495 tgagtaaagcatccaatacataagctatcatagtttctgaagattcctcctacagctgctctattagggt 1344564  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 40 - 200
Target Start/End: Complemental strand, 31136619 - 31136450
Alignment:
Q  40 ttccaaccaaaagtttgagaaaccattgacgtgagcaatctcaatagcagtcatagcagttactaattcagcatata---------actcccccagatac 130  Q
    |||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||          |||||||||||||    
T  31136619 ttccaaccaaaaatttgagaaaccattgatgtgagctatctcaatagcagtcatagcagctactaattcagcatatagtgcattttgctcccccagatac 31136520  T
Q  131 taggtaaaacatctaatacatatgctatcagagtttctgaagattcctcatgcagctactctattagggt 200  Q
    |  ||||| |||| || ||||| ||||||||| |||||||||||||||| || |||| ||||||| ||||    
T  31136519 tgagtaaagcatccaacacataagctatcagaatttctgaagattcctcctgtagctgctctattggggt 31136450  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 41 - 200
Target Start/End: Complemental strand, 7578403 - 7578235
Alignment:
Q  41 tccaaccaaaagtttgagaaaccattgacgtgagcaatctcaatagcagtcatagcagttactaattcagcatataa---------ctcccccagatact 131  Q
    ||||||||||| ||  |||||||||| | ||||||||||||||| ||||||||||||| ||| | |||| || |||          |||||||||||| |    
T  7578403 tccaaccaaaaattccagaaaccattaatgtgagcaatctcaatggcagtcatagcagctaccagttcaacaaatagagcatcatgctcccccagatatt 7578304  T
Q  132 aggtaaaacatctaatacatatgctatcagagtttctgaagattcctcatgcagctactctattagggt 200  Q
      || ||||| | |||||||||||||||||||||||||||||| |||| | ||||| |||| |||||||    
T  7578303 tagtgaaacaaccaatacatatgctatcagagtttctgaagatgcctcctacagctgctctgttagggt 7578235  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 200
Target Start/End: Complemental strand, 9701300 - 9701131
Alignment:
Q  40 ttccaaccaaaagtttgagaaaccattgacgtgagcaatctcaatagcagtcatagcagttactaattcagcatataa---------ctcccccagatac 130  Q
    |||||||||||| ||  |||||||||| | ||||||||||||||| ||| |||||  || ||||| ||||||| |||          ||||||||||||     
T  9701300 ttccaaccaaaaattcaagaaaccattaatgtgagcaatctcaatggcaatcataatagctactagttcagcaaatagagcatcatgctcccccagatat 9701201  T
Q  131 taggtaaaacatctaatacatatgctatcagagtttctgaagattcctcatgcagctactctattagggt 200  Q
    |  || ||||| | | |||||||||||||| ||||||||||||| |||| |  |||| ||||||||||||    
T  9701200 tgagtgaaacaaccagtacatatgctatcaaagtttctgaagatgcctcctatagctgctctattagggt 9701131  T

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Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 43 - 200
Target Start/End: Complemental strand, 14723159 - 14722993
Alignment:
Q  43 caaccaaaagtttgagaaaccattgacgtgagcaatctcaatagcagtcatagcagttactaattcagcatataa---------ctcccccagatactag 133  Q
    ||||||||| |||||||||||||||| ||||||||||| |||||| |||||| ||  |||||||||||||||||          ||||||||||||||      
T  14723159 caaccaaaaatttgagaaaccattgatgtgagcaatcttaatagccgtcataacaactactaattcagcatatagtgcattttgctcccccagatactga 14723060  T
Q  134 gtaaaacatctaatacatatgctatcagagtttctgaagattcctcatgcagctactctattagggt 200  Q
    ||||| |||| || |||||  ||||||||||||||||||||||||| ||||||| ||||||||||||    
T  14723059 gtaaagcatccaacacataaactatcagagtttctgaagattcctcctgcagctgctctattagggt 14722993  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 200
Target Start/End: Original strand, 12218812 - 12218981
Alignment:
Q  41 tccaaccaaaagtttgagaaaccattgacgtgagcaatctcaatagcagtcatagcagttactaattcagcatataa---------ctccccc-agatac 130  Q
    ||||||||||| ||  |||||||||| | ||||||||||||||| ||||||||||||| ||| | ||||||| |||          ||||||| |||||     
T  12218812 tccaaccaaaaattccagaaaccattaatgtgagcaatctcaatggcagtcatagcagctaccagttcagcaaatagagcatcatgctccccccagatat 12218911  T
Q  131 taggtaaaacatctaatacatatgctatcagagtttctgaagattcctcatgcagctactctattagggt 200  Q
    |  || ||||| | |||||||||||||||||||||||||||||| |||| | ||||| ||||||||||||    
T  12218912 ttagtgaaacaaccaatacatatgctatcagagtttctgaagatgcctcctacagctgctctattagggt 12218981  T

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Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 40 - 200
Target Start/End: Complemental strand, 7705596 - 7705427
Alignment:
Q  40 ttccaaccaaaagtttgagaaaccattgacgtgagcaatctcaatagcagtcatagcagttactaattcagcatata---------actcccccagatac 130  Q
    ||||||| |||| || ||||||||||||| |||||| ||||||||||||| |||||||| |||||||| ||||||||          |||||||||||||    
T  7705596 ttccaactaaaaattagagaaaccattgatgtgagctatctcaatagcagacatagcagctactaatttagcatatattgcattttgctcccccagatac 7705497  T
Q  131 taggtaaaacatctaatacatatgctatcagagtttctgaagattcctcatgcagctactctattagggt 200  Q
    |  ||||| |||| || ||||| ||||||||| |||||||||||||||| ||||||| ||||||| ||||    
T  7705496 tgagtaaagcatccaacacataagctatcagaatttctgaagattcctcctgcagctgctctattggggt 7705427  T

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Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 40 - 200
Target Start/End: Complemental strand, 48920749 - 48920580
Alignment:
Q  40 ttccaaccaaaagtttgagaaaccattgacgtgagcaatctcaatagcagtcatagcagttactaattcagcatata---------actcccccagatac 130  Q
    |||||||||||| |||||||||||||||| |||||  || ||||||||||||||||||| ||||| ||| |||||||          |||||||||||||    
T  48920749 ttccaaccaaaaatttgagaaaccattgatgtgagttatttcaatagcagtcatagcagctactagttcggcatatagtgcattatgctcccccagatac 48920650  T
Q  131 taggtaaaacatctaatacatatgctatcagagtttctgaagattcctcatgcagctactctattagggt 200  Q
    |  ||||| |||| || |||||  |||||||| ||||| |||||||||| ||||||| ||||||| ||||    
T  48920649 tgagtaaagcatccaacacataatctatcagaatttctaaagattcctcctgcagctgctctattggggt 48920580  T

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Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 40 - 200
Target Start/End: Complemental strand, 55468713 - 55468544
Alignment:
Q  40 ttccaaccaaaagtttgagaaaccattgacgtgagcaatctcaatagcagtcatagcagttactaattcagcatata---------actcccccagatac 130  Q
    |||||||||||| ||  |||||||||| | ||||||||||||||| ||||||||||||| ||||| ||||||| |||          ||||||||||||     
T  55468713 ttccaaccaaaaattcaagaaaccattaatgtgagcaatctcaatggcagtcatagcagctactagttcagcaaatagagcatcatgctcccccagatat 55468614  T
Q  131 taggtaaaacatctaatacatatgctatcagagtttctgaagattcctcatgcagctactctattagggt 200  Q
    || || ||||| | |||||||||| |||| |||||||||||||| |||| | ||||| |||| |||||||    
T  55468613 taagtgaaacaaccaatacatatgatatctgagtttctgaagatgcctcctacagctgctctgttagggt 55468544  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 27189776 - 27189694
Alignment:
Q  118 ctcccccagatactaggtaaaacatctaatacatatgctatcagagtttctgaagattcctcatgcagctactctattagggt 200  Q
    |||||||||||| |  || ||||| | | |||||||||||||| ||||||||||||| |||| |  |||| ||||||||||||    
T  27189776 ctcccccagatattgagtgaaacaaccagtacatatgctatcaaagtttctgaagatgcctcctatagctgctctattagggt 27189694  T

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