View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2301_low_1 (Length: 538)

Name: NF2301_low_1
Description: NF2301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2301_low_1
NF2301_low_1
[»] chr6 (8 HSPs)
chr6 (173-520)||(32671160-32671505)
chr6 (362-430)||(21403253-21403320)
chr6 (273-324)||(21403342-21403393)
chr6 (70-110)||(32672396-32672436)
chr6 (362-430)||(29122869-29122937)
chr6 (360-406)||(8091628-8091674)
chr6 (362-423)||(8084612-8084673)
chr6 (12-56)||(32703576-32703620)
[»] scaffold0330 (4 HSPs)
scaffold0330 (362-430)||(14835-14904)
scaffold0330 (173-232)||(10147-10206)
scaffold0330 (282-324)||(14926-14968)
scaffold0330 (469-514)||(14754-14799)
[»] chr7 (1 HSPs)
chr7 (469-511)||(32028533-32028575)
[»] scaffold0240 (3 HSPs)
scaffold0240 (474-514)||(10539-10579)
scaffold0240 (276-324)||(11300-11348)
scaffold0240 (403-468)||(11225-11290)
[»] chr8 (1 HSPs)
chr8 (389-427)||(2805042-2805080)
[»] chr5 (1 HSPs)
chr5 (175-232)||(9296545-9296602)


Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 173 - 520
Target Start/End: Complemental strand, 32671505 - 32671160
Alignment:
Q  173 tggtgctggaattaatttgttggctacatcattttgttttaggttacaacatttgttatcttcatttatatttttcatataccttcaaaagattcctgca 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||| ||||||||||    
T  32671505 tggtgctggaattaatttgttggctacatcattttgttttaggttacaacatttgttatgttcatttatatttttcatatacctgtaaa-gattcctgca 32671407  T
Q  273 tgcctgcagaaaatagacgtgcttgtttggttatggttccttcctgcagtctattcattttacttttctttaannnnnnnnnaggacaaaatggaaaaag 372  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||         ||||||||||||||||||    
T  32671406 tgcctgcagaaaataggcgtgcttgtttggttatggttccttcctgcagtctcttcattt-acttttctttaatttttttttaggacaaaatggaaaaag 32671308  T
Q  373 ggaaaaagtagatgagaaatattaaattggatgaagctgaatatggaaatattaaatttccatgcacagtaaattttgaattaaaagctctttagcatgt 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32671307 ggaaaaagtagatgagaaatattaaattggatgaagctgaatatggaaatattaaatttccatgcacagtaaattttgaattaaaagctctttagcatgt 32671208  T
Q  473 gttgttgtgtgtggaatgcagagagttattatgcatgctttagcatat 520  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||    
T  32671207 gttgttgtgtgtggaatgcagagagttattatgcatggcttagcatat 32671160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 362 - 430
Target Start/End: Complemental strand, 21403320 - 21403253
Alignment:
Q  362 aatggaaaaagggaaaaagtagatgagaaatattaaattggatgaagctgaatatggaaatattaaatt 430  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21403320 aatgaaaaaagggaaaaattagatgagaaatattaaattggatgaagctgaata-ggaaatattaaatt 21403253  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 21403393 - 21403342
Alignment:
Q  273 tgcctgcagaaaatagacgtgcttgtttggttatggttccttcctgcagtct 324  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||||||||    
T  21403393 tgcctgcataaaataggtgtgcttgtttggttatggttccttcctgcagtct 21403342  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 32672436 - 32672396
Alignment:
Q  70 aaaaagtattatggtacacaaacataattaattacgctttt 110  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  32672436 aaaaagtattatggtagacaaacataattaattacgctttt 32672396  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 430
Target Start/End: Original strand, 29122869 - 29122937
Alignment:
Q  362 aatggaaaaagggaaaaagtagatgagaaatattaaattggatgaagctgaatatggaaatattaaatt 430  Q
    ||||||||| || |||| ||| ||||||| || ||||||||||| ||||||| | ||||||||||||||    
T  29122869 aatggaaaagggaaaaaggtaaatgagaattaataaattggatggagctgaaaaaggaaatattaaatt 29122937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 8091628 - 8091674
Alignment:
Q  360 aaaatggaaaaagggaaaaagtagatgagaaatattaaattggatga 406  Q
    ||||||||||||| ||||||||| || ||||| ||||||||||||||    
T  8091628 aaaatggaaaaagagaaaaagtaaataagaaagattaaattggatga 8091674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 423
Target Start/End: Original strand, 8084612 - 8084673
Alignment:
Q  362 aatggaaaaagggaaaaagtagatgagaaatattaaattggatgaagctgaatatggaaata 423  Q
    ||||||||||| ||||||||  |||||||| ||||||||||||||   |||| |||||||||    
T  8084612 aatggaaaaagagaaaaagtgaatgagaaagattaaattggatgattttgaaaatggaaata 8084673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 32703620 - 32703576
Alignment:
Q  12 atgaaaatccggcaaacaagggtctaattgttataacttttgaaa 56  Q
    |||||||| |||| ||||||||| ||||||||||| |||||||||    
T  32703620 atgaaaattcggcgaacaagggtttaattgttatagcttttgaaa 32703576  T

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Target: scaffold0330 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 362 - 430
Target Start/End: Complemental strand, 14904 - 14835
Alignment:
Q  362 aatggaaaaag-ggaaaaagtagatgagaaatattaaattggatgaagctgaatatggaaatattaaatt 430  Q
    ||||||||||| ||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||    
T  14904 aatggaaaaagcggaaaaagtggatgagaaatattaaatttgatgaaggtgaatatggaaatattaaatt 14835  T

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Target: scaffold0330; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 10147 - 10206
Alignment:
Q  173 tggtgctggaattaatttgttggctacatcattttgttttaggttacaacatttgttatc 232  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| |||||||| |||||    
T  10147 tggtgctggaatgaatttgtaggctacatcattttgttttaggttgcaacattttttatc 10206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 324
Target Start/End: Complemental strand, 14968 - 14926
Alignment:
Q  282 aaaatagacgtgcttgtttggttatggttccttcctgcagtct 324  Q
    ||||||| ||||||| |||||||||||||||||||||||||||    
T  14968 aaaataggcgtgcttatttggttatggttccttcctgcagtct 14926  T

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Target: scaffold0330; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 469 - 514
Target Start/End: Complemental strand, 14799 - 14754
Alignment:
Q  469 atgtgttgttgtgtgtggaatgcagagagttattatgcatgcttta 514  Q
    |||||||||||||| | ||||||||| |||||||||||||||||||    
T  14799 atgtgttgttgtgttttgaatgcagaaagttattatgcatgcttta 14754  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 469 - 511
Target Start/End: Original strand, 32028533 - 32028575
Alignment:
Q  469 atgtgttgttgtgtgtggaatgcagagagttattatgcatgct 511  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  32028533 atgtgttgttgtgtgtggagtgcagagagttattatgcatgct 32028575  T

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Target: scaffold0240 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 474 - 514
Target Start/End: Complemental strand, 10579 - 10539
Alignment:
Q  474 ttgttgtgtgtggaatgcagagagttattatgcatgcttta 514  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  10579 ttgttgtgtgtggagtgcagagagttattatgcatgcttta 10539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 11348 - 11300
Alignment:
Q  276 ctgcagaaaatagacgtgcttgtttggttatggttccttcctgcagtct 324  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||||||||    
T  11348 ctgcataaaataggcgtgcttgtttggttatggttctttcctgcagtct 11300  T

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Target: scaffold0240; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 468
Target Start/End: Complemental strand, 11290 - 11225
Alignment:
Q  403 atgaagctgaatatggaaatattaaatttccatgcacagtaaattttgaattaaaagctctttagc 468  Q
    |||||| |||||||||||||| || ||| ||||||||  |||||||  ||||||| ||||||||||    
T  11290 atgaagttgaatatggaaatactacattgccatgcactataaatttgcaattaaaggctctttagc 11225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 427
Target Start/End: Complemental strand, 2805080 - 2805042
Alignment:
Q  389 aaatattaaattggatgaagctgaatatggaaatattaa 427  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  2805080 aaatattaaattagatgaagctaaatatggaaatattaa 2805042  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 9296545 - 9296602
Alignment:
Q  175 gtgctggaattaatttgttggctacatcattttgttttaggttacaacatttgttatc 232  Q
    ||||||||||| || ||||||||||||||| |||||| ||||| ||||| || |||||    
T  9296545 gtgctggaattcatatgttggctacatcatcttgtttcaggttgcaacaatttttatc 9296602  T

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