View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2301_low_3 (Length: 302)
Name: NF2301_low_3
Description: NF2301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2301_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 44349568 - 44349301
Alignment:
| Q |
18 |
tgagtgtatacatttttaatcaattctattattttcatcattcattttcatgttaattaattccagtgcttcaagagtacaagggaaaagctaggttctt |
117 |
Q |
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| T |
44349568 |
tgagtgtatacatttt-aatcaattctatt---ttcatcattcattttcatgttaatt----ccagtgcttcaagagtacatgggaaaagctaggttctt |
44349477 |
T |
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| Q |
118 |
gtatggagagtccatgggtggagcagttagtctacttttgcatcaaaaggacccttctttttgggatggtgccgttcttgtcgcacccatgtgtaaggta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44349476 |
gtatggagagtccatgggtggagcagttagtctacttttgcatcaaaaggatccttctttttgggatggtgccgttcttgtcgcacccatgtgtaaggta |
44349377 |
T |
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| Q |
218 |
cacattgtaaataagtatttacactaacaatgtatatgaattaaatttatgtttttaatgattcaatgagtataat |
293 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44349376 |
cacattgtaaaaaagtatttacactaacaatgtatatgaattaaatttatgtttttaatgattcaatgattataat |
44349301 |
T |
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