View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2302_high_2 (Length: 223)
Name: NF2302_high_2
Description: NF2302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2302_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 36480868 - 36480679
Alignment:
| Q |
16 |
agagaaacattaaatgcataaattttgttagatttgatgaaaaagaaaaactgaactaagtgggtgactctcgttatcgtttgttgctggcaatttaatt |
115 |
Q |
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| T |
36480868 |
agagaaacatttaatgcataaattttgttagatttgatgaaaaagaaaaactgaactaagtgggtgactctcattatcgtttgttgctggcaatttaatt |
36480769 |
T |
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| Q |
116 |
cagcacaagtacatcagttgaatattcaaaatatcttaaaaatcatttacttgttattgtgacatgagcagtaaggacaaaggacatagg |
205 |
Q |
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| T |
36480768 |
tagcacaagtacatcagttgaatattcaaaatatcttaaaaatcatttacttgttattgtgacatgagcagtaaggacaaaggacatagg |
36480679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 36439202 - 36439110
Alignment:
| Q |
25 |
ttaaatgcataaattttgttagatttgatgaaaaagaaaaactgaactaagtgggtgactctcgttatcgtttgttgctggcaatttaattca |
117 |
Q |
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| T |
36439202 |
ttaaatgcataaattttgttagaattgaaggaaaaggaaaactcgaataagtgggtgagtctcgttatcgtttgttgctggcaatttaattca |
36439110 |
T |
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