View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2302_low_1 (Length: 270)
Name: NF2302_low_1
Description: NF2302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2302_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 9383210 - 9382975
Alignment:
| Q |
18 |
caacatatcatggaacctctactattggccttcacattatttctttcatcactcatttgctacataattttccagccaattttaaaccgtcacaaaaacc |
117 |
Q |
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| T |
9383210 |
caacatatcatggaacctctactattggccttcacattatttctttcatcactcatttgctacattattttccagccaattttaaaccgtcaaaaaaacc |
9383111 |
T |
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| Q |
118 |
tccctccatctcctctattcaaacttccgattatcggccacatgcacatgttaggtccccttctccaccactccttcgaccaactctcccaaaaatatag |
217 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
9383110 |
tccctccatctcctctattcaaacttccgatcatcggccacatgcacatgttaggtccccttctccaccactccttcgaccgcctctcccaaaaatacgg |
9383011 |
T |
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| Q |
218 |
accaatattttcacttaactttggttccgtcctctg |
253 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
9383010 |
accaatattttcacttaactttggttccgtcctctg |
9382975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 9400679 - 9400444
Alignment:
| Q |
18 |
caacatatcatggaacctctactattggccttcacattatttctttcatcactcatttgctacataattttccagccaattttaaaccgtcacaaaaacc |
117 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9400679 |
caacataccatggaacctctactattagccttcacattatttctttcatcactcatttgctacataattttccagccaattttaaaccgtcacaaaaacc |
9400580 |
T |
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| Q |
118 |
tccctccatctcctctattcaaacttccgattatcggccacatgcacatgttaggtccccttctccaccactccttcgaccaactctcccaaaaatatag |
217 |
Q |
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| T |
9400579 |
tccctccatcgcctctattcaaacttccgatcattggccacatgcacatgttaggtccccttctccaccactccttcgaccgcctctcccaaaaatacgg |
9400480 |
T |
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| Q |
218 |
accaatattttcacttaactttggttccgtcctctg |
253 |
Q |
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| T |
9400479 |
accaatattttcacttaactttggttccgtcctctg |
9400444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 23243116 - 23243193
Alignment:
| Q |
107 |
tcacaaaaacctccctccatctcctctattcaaacttccgattatcggccacatgcacatgttaggtccccttctcca |
184 |
Q |
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||||||| ||||||||||||| |||| |||||||||| ||||| ||||| |||||| | |||||||| || ||||| |
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| T |
23243116 |
tcacaaatacctccctccatcacctcctctcaaacttccaattattggccatatgcacctcttaggtcctctcctcca |
23243193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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