View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2303_high_1 (Length: 408)
Name: NF2303_high_1
Description: NF2303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2303_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Complemental strand, 5758628 - 5758234
Alignment:
| Q |
11 |
aatgagaaaatcacaatctctaaataaatcacataatataggacggatgaagtattactttgactatgctaaaatgattcaagaaataactatccatggt |
110 |
Q |
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| T |
5758628 |
aatgagaaaatcacaatctctaagtaaatcacataatataggacggatgaagtattactttgactatgctaaaa-gattcaaaaaataacaatccatggt |
5758530 |
T |
|
| Q |
111 |
cacattgttaccannnnnnngaggcaaggtcataatgttacctaaagctcaagtttccaaaaatgtgaagaaaatcaaatcctattgttgtgttgttggg |
210 |
Q |
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| T |
5758529 |
cacattgttaccatttttttgaggcaacgtcataatgttacctaaagctcaagtttccaaaaatgtgaagaaaatcaaatcctattgttgtgttgttggg |
5758430 |
T |
|
| Q |
211 |
tgaggaccacgtctaaaatgagggtagagtagaggtagggatgatgatggaagatgattactattagtgttcactactagtgtcaagtaattgattgcct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5758429 |
tgaggaccacgtctaaaatgagggtagagtagaggtagggatgatgatggaagatgattactattagtgttcactactagtgtcaagtaattgattgcct |
5758330 |
T |
|
| Q |
311 |
tagcatgcatagatatcaacttcttccttatttgtatttcgttaagattcgtgtcttcat-ctttatctttatgttcctaaatctgttttgttcat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
5758329 |
tagcatgcatagatatcaacttcttccttatttgtatttcgttaagattcgtgtcttcatcctttatctctatgttcctaaatctgttttgttcat |
5758234 |
T |
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