View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2303_low_1 (Length: 666)

Name: NF2303_low_1
Description: NF2303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2303_low_1
NF2303_low_1
[»] chr1 (2 HSPs)
chr1 (295-648)||(50751883-50752235)
chr1 (9-297)||(50752781-50753068)
[»] chr4 (1 HSPs)
chr4 (542-576)||(223865-223899)


Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 295 - 648
Target Start/End: Complemental strand, 50752235 - 50751883
Alignment:
Q  295 aaaggccactcactttttagttcgacttcgtgtacatccgtatccatcacaactatttttaatatttgtatgttttaaactattttcagaagtaaaaggt 394  Q
    |||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  50752235 aaaggccactcactttctagttcgacttcatgttcatccgtatccatcacaactatttttaatatttgtatgttttaaactattttcaaaagtaaaaggt 50752136  T
Q  395 tcatcatgaaacaaacacatttccatattgtcttccattggattgtgtttagcaaccatcatgcacaaagatcatggattcaacaaaaacccaagtctca 494  Q
    | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50752135 tgatca-gaaacaaacacatttccatattgtcttccattggattgtgtttagcaaccatcatgcacaaagatcatggattcaacaaaaacccaagtctca 50752037  T
Q  495 acactatgaattgatagtaaaattgatgagaaattatataacaataatattgaacaagggttttagagagaagaagataatttttgtaaaaaagaagaag 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50752036 acactatgaattgatagtaaaattgatgagaaattatataacaataatattgaacaagggttttagagagaagaagataatttttgtaaaaaagaagaag 50751937  T
Q  595 aaaaatgtgattggtacaaagatcaatcaatcaatagcaattagtaaaagtaac 648  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50751936 aaaaatgtgattggtacaaagatcaatcaatcaatagcaattagtaaaagtaac 50751883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 9 - 297
Target Start/End: Complemental strand, 50753068 - 50752781
Alignment:
Q  9 gagatgaaatagagagtgaaatgtgatgagagagactaataaatgcgaagaacgtgaatgtatgagagtgtgagaataagggtactggatagagaatata 108  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  50753068 gagaggaaatagagagtgaaatgtgatgagagagactaataaatgcgaagaaggtgaatatatgagagtgtgagaataagggtactggatagagaatata 50752969  T
Q  109 tagatgaaggaagtgcgtgctttatagatggagcaagcgcgtattgaaccaagaccatacacgtggaatcaaggtttgagcggagagattttccannnnn 208  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||         
T  50752968 tagatggaggaagtgcgtgctttatagatggagcaagcgcgtattgaaccaagaccatacacgtggaatcagggtttgagtggagagattttccattttt 50752869  T
Q  209 nnnaacaaatgggttttaaaaaagagattgatcaatttgttttctatataagtaataaaaatctctaaacttattagtagtggtgtaaa 297  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50752868 ttg-acaaatgggttttaaaaaagagattgatcaatttgttttctatataagtaataaaaatctctaaacttattagtagtggtgtaaa 50752781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 542 - 576
Target Start/End: Complemental strand, 223899 - 223865
Alignment:
Q  542 tattgaacaagggttttagagagaagaagataatt 576  Q
    ||||||||||| |||||||||||||||||||||||    
T  223899 tattgaacaagagttttagagagaagaagataatt 223865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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