View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2304_high_1 (Length: 365)

Name: NF2304_high_1
Description: NF2304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2304_high_1
NF2304_high_1
[»] chr8 (2 HSPs)
chr8 (18-206)||(9994145-9994333)
chr8 (230-322)||(15919130-15919222)
[»] chr2 (1 HSPs)
chr2 (228-324)||(37785459-37785555)
[»] chr3 (2 HSPs)
chr3 (230-324)||(54873491-54873585)
chr3 (238-324)||(55430005-55430091)
[»] chr6 (1 HSPs)
chr6 (232-324)||(7020565-7020657)
[»] chr5 (2 HSPs)
chr5 (230-313)||(28906199-28906282)
chr5 (230-313)||(28942594-28942677)
[»] chr1 (1 HSPs)
chr1 (230-313)||(16660646-16660729)
[»] chr4 (1 HSPs)
chr4 (54-151)||(35017357-35017457)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 9994333 - 9994145
Alignment:
Q  18 aagaatcgtgctacacatcgcaagaaaaaactcatgaatgtatcaagactcttaaaatgcttcgagaacaaaaaataataataaaggtcccacttactat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9994333 aagaatcgtgctacacatcgcaagaaaaaactcatgaatgtatcaagactcttaaaatgcttcgagaacaaaaaataataatagaggtcccacttactat 9994234  T
Q  118 aaaaatagttgctgaaataaaagtatattctttttagcctctcgtgaatttctcggaaaataaaatgtcgtgagatttagcatttctgc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9994233 aaaaatagttgctgaaataaaagtatattctttttagcctctcgtgaatttctcggaaaataaaatgtcgtgagatttagcatttctgc 9994145  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 230 - 322
Target Start/End: Original strand, 15919130 - 15919222
Alignment:
Q  230 aaatagctggaccattattgaagattttgaccggatgccattcgttggattagaccttctcctgaattaacatagaaagtttttccatgcaaa 322  Q
    |||||||| |||||||||| |||||||||| |||||||||||| || ||||  ||||||||| ||||||||||||||||||||||||||||||    
T  15919130 aaatagctagaccattattaaagattttgatcggatgccattcattagattgaaccttctccagaattaacatagaaagtttttccatgcaaa 15919222  T

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Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 228 - 324
Target Start/End: Original strand, 37785459 - 37785555
Alignment:
Q  228 tcaaatagctggaccattattgaagattttgaccggatgccattcgttggattagaccttctcctgaattaacatagaaagtttttccatgcaaagg 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37785459 tcaaatagctggaccattattgaagattttgaccggatgccattcgttggattagaccttctcctaaattaacatagaaagtttttccatgcaaagg 37785555  T

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Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 230 - 324
Target Start/End: Complemental strand, 54873585 - 54873491
Alignment:
Q  230 aaatagctggaccattattgaagattttgaccggatgccattcgttggattagaccttctcctgaattaacatagaaagtttttccatgcaaagg 324  Q
    |||||||||||||||||||| ||||||| | |||||||||||| || ||||  |||||||||| |||||||||||||||||||||||||||||||    
T  54873585 aaatagctggaccattattggagatttttatcggatgccattcattagattgaaccttctccttaattaacatagaaagtttttccatgcaaagg 54873491  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 238 - 324
Target Start/End: Original strand, 55430005 - 55430091
Alignment:
Q  238 ggaccattattgaagattttgaccggatgccattcgttggattagaccttctcctgaattaacatagaaagtttttccatgcaaagg 324  Q
    |||||||||||| ||||||||| |||||||||||| || ||||  ||||||||||||||||||||||||| ||||||| ||||||||    
T  55430005 ggaccattattggagattttgatcggatgccattcattagattgaaccttctcctgaattaacatagaaattttttccgtgcaaagg 55430091  T

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Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 7020657 - 7020565
Alignment:
Q  232 atagctggaccattattgaagattttgaccggatgccattcgttggattagaccttctcctgaattaacatagaaagtttttccatgcaaagg 324  Q
    |||| ||||||||||||| ||||||||| ||||||| |||| || ||||  ||||||||||||||||||||||||||||||||||||||||||    
T  7020657 atagttggaccattattggagattttgatcggatgctattcattagattgaaccttctcctgaattaacatagaaagtttttccatgcaaagg 7020565  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 230 - 313
Target Start/End: Original strand, 28906199 - 28906282
Alignment:
Q  230 aaatagctggaccattattgaagattttgaccggatgccattcgttggattagaccttctcctgaattaacatagaaagttttt 313  Q
    |||||| || ||||||||||||||||||||  || || |||||||||||||| |||||||  ||||||||||||||||| ||||    
T  28906199 aaatagttgaaccattattgaagattttgattgggtgtcattcgttggattaaaccttcttttgaattaacatagaaagctttt 28906282  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 230 - 313
Target Start/End: Original strand, 28942594 - 28942677
Alignment:
Q  230 aaatagctggaccattattgaagattttgaccggatgccattcgttggattagaccttctcctgaattaacatagaaagttttt 313  Q
    |||||| || ||||||||||||||||||||  || || |||||||||||||| |||||||  ||||||||||||||||| ||||    
T  28942594 aaatagttgaaccattattgaagattttgattgggtgtcattcgttggattaaaccttcttttgaattaacatagaaagctttt 28942677  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 230 - 313
Target Start/End: Original strand, 16660646 - 16660729
Alignment:
Q  230 aaatagctggaccattattgaagattttgaccggatgccattcgttggattagaccttctcctgaattaacatagaaagttttt 313  Q
    |||||| || ||||||||||||||||||||  || || |||||||||||||| |||||||  ||||||||||||||||| ||||    
T  16660646 aaatagttgaaccattattgaagattttgattgggtgtcattcgttggattaaaccttcttttgaattaacatagaaagctttt 16660729  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 151
Target Start/End: Complemental strand, 35017457 - 35017357
Alignment:
Q  54 aatgtatcaagactcttaaaatgcttcgagaacaaaaaataataataa---aggtcccacttactataaaaatagttgctgaaataaaagtatattcttt 150  Q
    ||||||| | |||||  |||||||||  ||||||||||||||||||||   || | ||||| || ||||||  |||| |||||||||||||||||| |||    
T  35017457 aatgtataacgactccgaaaatgcttttagaacaaaaaataataataataaagcttccactaaccataaaagcagttcctgaaataaaagtatattgttt 35017358  T
Q  151 t 151  Q
    |    
T  35017357 t 35017357  T

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