View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2305_high_1 (Length: 294)
Name: NF2305_high_1
Description: NF2305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2305_high_1 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 80 - 294
Target Start/End: Complemental strand, 42667614 - 42667400
Alignment:
| Q |
80 |
catcaaggacattgaagtacacacgtctttgaaaggaaagaacaagaagaagcaaggatcagaaacgcatcaatctgaaaagattgagaaaacaaaaaat |
179 |
Q |
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| T |
42667614 |
catcaaggacattgaagtacacacgtctttgaaaggaaagaacaagaagaagcaaggatcagaaacgcatcaatctgaaaagattgagaaaacaaaaaat |
42667515 |
T |
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| Q |
180 |
aacactgctgcagagagaaagaataaaaagttaattgtaacgaaggatgagaaaatgcaacaatctttgaaaggaaagaagaagcatagacataaaagcg |
279 |
Q |
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| T |
42667514 |
aacactgctgcagagagaaagaataaaaagttaattgtaacgaaggatgagaaaatgcaacaatctttgaaaggaaagaagaagcatagacataaaagcg |
42667415 |
T |
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| Q |
280 |
ttgaaaattttcaga |
294 |
Q |
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| T |
42667414 |
ttgaaaattttcaga |
42667400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 42667693 - 42667642
Alignment:
| Q |
1 |
gatttagcgatgatactcatgttaaccgttatcgtggattggacttaaactt |
52 |
Q |
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| T |
42667693 |
gatttagcgatgatactcatgttaaccgttatcgtggattggacttaaactt |
42667642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 294
Target Start/End: Complemental strand, 42667304 - 42667265
Alignment:
| Q |
255 |
aagaagaagcatagacataaaagcgttgaaaattttcaga |
294 |
Q |
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| T |
42667304 |
aagaagcagcatagacataaaagcgttgaaaattttcaga |
42667265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 294
Target Start/End: Complemental strand, 42667373 - 42667331
Alignment:
| Q |
255 |
aagaagaagcatagacataa---aagcgttgaaaattttcaga |
294 |
Q |
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| T |
42667373 |
aagaagaagcatagacataataaaagcgttgaaaattttcaga |
42667331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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