View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2305_low_2 (Length: 254)
Name: NF2305_low_2
Description: NF2305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2305_low_2 |
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| [»] scaffold0041 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 82112 - 81874
Alignment:
| Q |
16 |
atgaataaagagagtttttcctctgaccctactctccttcctcttttactcattgcttaaatatcaacagttgtcagattcctttcttagacaagaagct |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
82112 |
atgaataaagagagtttttcctctgaccctactctccttcctcttttactcattgcttaaatatcaacagttgtcagattcctttcttagacaagaagct |
82013 |
T |
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| Q |
116 |
ctctatgtactactcctacaacattactttcaccttctatttttatgtcattgttcccttccttagtccttacttaattaaaacaatatttggtgtgtaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
82012 |
ctctatgtactactcctacaacattactttcaccttctatttttatgtcattgttcccttccttagtccttacttaattaaaacaatatttggtgtgtat |
81913 |
T |
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| Q |
216 |
ttggttttacttataaaattattagaatttattattttt |
254 |
Q |
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| T |
81912 |
ttggttttacttataaaattattagaatttattattttt |
81874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 40884172 - 40884410
Alignment:
| Q |
16 |
atgaataaagagagtttttcctctgaccctactctccttcctcttttactcattgcttaaatatcaacagttgtcagattcctttcttagacaagaagct |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40884172 |
atgaataaagagagtttttcctctgaccctactctccttcctcttttactcattgcttaaatatcaacagttgtcagattcctttcttagacaagaagct |
40884271 |
T |
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| Q |
116 |
ctctatgtactactcctacaacattactttcaccttctatttttatgtcattgttcccttccttagtccttacttaattaaaacaatatttggtgtgtaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40884272 |
ctctatgtactactcctacaacattactttcaccttctatttttatgtcattgttcccttccttagtccttacttaattaaaacaatatttggtgtgtat |
40884371 |
T |
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| Q |
216 |
ttggttttacttataaaattattagaatttattattttt |
254 |
Q |
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| T |
40884372 |
ttggttttacttataaaattattagaatttattattttt |
40884410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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