View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2306_high_10 (Length: 368)
Name: NF2306_high_10
Description: NF2306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2306_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 14523240 - 14523462
Alignment:
| Q |
13 |
aatatagctaagaaggttccgtaaagtctacctattgtaaattttctgtcaaattaaaggagcttatcactgcannnnnnnnacagctatactcgatatc |
112 |
Q |
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| T |
14523240 |
aatatagctaagaaggttccgtaaagtctacctattgtaaattttctgtcaaattaaaggagcttatcactgcattttttt-acagctatactcgatatc |
14523338 |
T |
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| Q |
113 |
gatttgaatgtttgagggaagaaagaagattttgatttgtagaatatgattgttagtattcaactagcttctgttaattgagaatataattcaatactat |
212 |
Q |
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| T |
14523339 |
gatttgaatgtttgagggaagaaagaagattttgatttgtagaatatgattgttagtattcaactaacttctattaattgagaatataattcaatactat |
14523438 |
T |
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| Q |
213 |
tagtctattactaacaatcatatt |
236 |
Q |
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|||||||||||||||||||||||| |
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| T |
14523439 |
tagtctattactaacaatcatatt |
14523462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 14523521 - 14523594
Alignment:
| Q |
295 |
cattataatggttattcactacgnnnnnnntctagttggaaaaacaataggaacatgtttacaaaaaactcatt |
368 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14523521 |
cattataatggttattcactacgaaaaaaatatagttggaaaaacaatagtaacatgtttacaaaaaactcatt |
14523594 |
T |
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