View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2306_high_12 (Length: 349)
Name: NF2306_high_12
Description: NF2306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2306_high_12 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 23017423 - 23017077
Alignment:
| Q |
1 |
ttactccccctccacttttattttgttatgcttccgtcaagttagttacttttttccattaataactaagtatgtttgggtggggccaatccatgtagag |
100 |
Q |
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| T |
23017423 |
ttactccccctccacttttattttgttatgcttccgtcaagttagttacttttttccattaataactaagtatgtttgggtggggccaatccatgtagag |
23017324 |
T |
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| Q |
101 |
ctttgttctagcatcaattaggcccctgctagtggacggttgtcttcagtcggatactgagttttnnnnnnnnnnnnnnnnngtctatgatgtagttgat |
200 |
Q |
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| T |
23017323 |
ctttgttctagcatcaattaggcccctgctagtggacggttgtcttcagtcggatactgagtttt--aaaaaaaaaaaaatagtctatgatgtagttgat |
23017226 |
T |
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| Q |
201 |
aatgtaaaaaccgtagtttctaagtttgttttgtaatgcagtggatgtgtgacatcagcggagacggtattgctgaataaccaaggtttggatgagtttt |
300 |
Q |
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| T |
23017225 |
aatgtaaaaaccgtagtttctaagtttgttttgtaatgcagtggatgtgtgacatcagcggagacggtattgctgaataaccaaggtttggatgagtttt |
23017126 |
T |
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| Q |
301 |
tgtccaatatcaatgaaggaaagacagtgattgtctctgctcctccaca |
349 |
Q |
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| T |
23017125 |
tgtccaatatcaatgaaggaaagacagtgattgtgtctgtttctccaca |
23017077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 224 - 349
Target Start/End: Original strand, 54914348 - 54914473
Alignment:
| Q |
224 |
gtttgttttgtaatgcagtggatgtgtgacatcagcggagacggtattgctgaataaccaaggtttggatgagtttttgtccaatatcaatgaaggaaag |
323 |
Q |
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| T |
54914348 |
gtttgtttggtaatacagtggatgtgtcacatcagcagagacggttatgctggagaagcaaggtttggatgagtttctgtccaatattaataaaggaaag |
54914447 |
T |
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| Q |
324 |
acagtgattgtctctgctcctccaca |
349 |
Q |
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| T |
54914448 |
gcagtgattgtgtctgtttctccaca |
54914473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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